EBOLA Three Ebola Models: Intervention, Spread, and Quarantine

willdo

Veteran Member
I have been looking for models that may have driven policy decisions regarding the predictive risks of Ebola spreading to other countries, the impact of interventions, and the quarantine period. I am not sure if these have been shared previously but I read through them in order to better understand the advice, if these were considered, that officials may have formulated from these reports. They are not the easiest things to read and I am sure there are other interesting variables I did not catch so I encourage you to read through them, too.

In the model for assessing the International Spread, I found the graph depicting air travel from outbreak countries revealing. It depicted the US as receiving 3000-6000 travelers from those countries weekly, not the 150 a day figure I have seen used in many articles. I also found it interesting that it described the limited access to air travel in those countries as reducing the risk of spread, with only Guinea connecting to the US.

The report noted that if Nigeria were to have an outbreak, which they did not include as an outbreak nation spreading in this model, it poses the greatest risk of spread because of the density of their population and because more people have the means/cause to travel, in addition to being an international hub connected to most other countries. They noted that Ghana was the next greatest risk of contributing to the spread if it should experience an outbreak that wasn't contained for the same reasons. In other words, they wanted to make the point that if they had outbreaks in either of those two countries, the model would dramatically change as would the risk of spreading to other countries. That would suggest to me, that if either of those two countries import a single infection, everyone better help them contain it. That may be more critical of an intervention, and at least equal to assisting in stopping the spread in current outbreaks.

I am not a math person so help me out with this to see if I am understanding their methods correctly. From what I can determine they built their spread risk model based on the assumption of an 80% reduction in airline traffic but that is not the actual experience. The air flight out of those countries hasn't been reduced by 80% has it? They explained there are several countries that have stopped direct flights but noted there are still airlines from other countries flying out, and the non-booking airlines are assisting them to book with those other airlines. In other words, in the model they presented, they assumed that air traffic would be dramatically reduced.

With that in mind, had the air traffic been reduced to 80%, they projected only a 3-4 week delay in reducing the risk of spread to other nations. They also assumed that there would be no mitigation reducing the ratio of transmission during the delay of the 3-4 week period. They assumed the 80% reduction on the front end of their projections but since that has not really happened, all of their international spread predictions are less than they should/would be/are. Does that make sense?

They had to have modeled projections with lesser reductions in air flight to arrive at the 3-4 week delay, with the 80%, and any lesser reductions in air flight would have shown an increase in the risk of spread. What I am saying is, if the air traffic matched actual experience, which I am pretty sure is no where near the 80% used, the risk of spread is/would be much greater than what they presented.

What they should have done was show actual experience, which I am guessing at most has been reduced to 50%, by the few airlines that have stopped flying out of those countries. This model isn't for the purpose of showing us the real risks we are experiencing. It had another purpose.

Maybe I am seeing too much in this, but was the purpose of this model to prove to policy makers or provide proof in support of a policy, that even if we reduced air flight by 80%, it would only delay the risk of spread by 3-4 weeks as a pre-set target someone had in mind? I would really like to see the real risks projections of what we are actually facing rather than the assumption of a 80% reduction. I would like to see a 95% reduction, too, but that might be unrealistic, because now we are flying people in there to work, and any reduction in risk by reducing the native population would be offset by the increase of flying aide workers in and out, as they would also have the potential of importing an infection.

Their assumption that there would be little mitigation during the 3-4 week delay is probably correct if the Impact of Interventions model is correct. The impact model basically determined that the outbreaks are past the point where mitigation can slow it down, predicting it will rise unabated to a peak before it decreases and that the epidemic is only in its beginning phase. In other words, the virus is in control, there is no way to stop its path of spread in those populations.

If these models are correct, in the current outbreaks in Africa, the only thing we can impact is survival rates and prevent its spread to other countries. The only prevention of spread to other countries is to reduce air flight. Looking at these three models together, that fact is inescapable. It would be interesting to see a vaccine model impact. Surely it would impact the spread if enough vaccines could be distributed to the population, especially if the claims Canada is making about their vaccine, in that it can prevent and treat an infection. The only impacts they assumed were that of diagnosis, isolation and support. I think they left in the risks in hospitals and funerals as unchanging.

The 80% reduction in air flight model showcasing the small gain of 3-4 weeks delay seems to be the major point they were trying to make in the spread model. The spread model assumed the hospital and funeral rate of infection in the spread of outbreak African countries but assumed zero risk of spread in hospitals or funerals in other countries that imported an infection. We all know that the US didn't do a very good job of preventing the spread in the hospital, so that assumption was not accurate and would have to be remodeled. It appears they did build in two scenarios into the Nigerian risks, one where they contained it, and one where they did not, but they did not correlate their experience to other countries.

The spread model was not projected beyond a month. This is because they would need to access additional outbreaks and their ability to contain those as part of the experience in the spread risks. The ratio of reproduction was a range of 1.5 to 2.0, basically doubling as we have seen used in other reports. Looking at the graph of their results it was interesting to see that they predicted the UK and the US to have a greater than, or equal risk to other African countries, with the US having twice the risk as South Africa and almost equal to Nigeria. That I am sure is primarily because we have not stopped air traffic from those countries. We have a greater risk of importing Ebola than countries that border the outbreak areas.

They also assumed that asymptomatic infected people do not infect other people. I am not sure that has been proven. They assumed singular imports of infection, no cluster imports, in other words, people traveling alone and did not factor in direct transmissions on planes. Once the import reached their destination, they assumed that person would infect less than 10 people, high end of 6 people and average of 4. They also assumed, in words, importing countries would contain the spread, but that wasn't modeled because the model was only for a short period of a month.

They did not build in any social factors of travel, in other words they assumed only local community transmission. I don't think that assumption can be applied to the culture of travel in the US. In the US we have already seen the potential of intrastate, interstate and international travel risk of spread with just two infected individuals that we know of, there could be more. Again, I am not a math person, but in explaining how they arrived at their math they referenced other models, and I am guessing those models were built from previous outbreak experience, and those outbreaks were in third world countries.

I think the report on the quarantine period was shared here already, but it basically concluded that 21 days is probably not enough.

Please feel free to criticize my analysis. I openly admit I am not a math person.

http://currents.plos.org/outbreaks/...ed-with-the-2014-west-african-ebola-outbreak/

http://currents.plos.org/outbreaks/...pidemic-of-ebola-in-sierra-leone-and-liberia/

http://currents.plos.org/outbreaks/article/on-the-quarantine-period-for-ebola-virus/#ref17
 
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Kris Gandillon

The Other Curmudgeon
_______________
My projected Infection Numbers show a similar effect when you consider the "official" WHO numbers which even the WHO admits are WAY under reality, vs. using some factor higher to account for the under-reporting.

We have been using 4X the official numbers as the "estimated" numbers that are probably closer to reality. One would think multiplying the official numbers by 4 would make a huge difference in how things play out, but in reality, it does not. At the scale this thing is at, if the real numbers are 4 times higher than the official numbers we reach major milestones like "1 million dead" less than 2 months sooner than using the "official" numbers which are 4 times lower.

I can crank it up to 10 times the official numbers and we reach 1 million dead abut 5 months sooner so that it a little more noticeable on the charts and graphs but still, in the grand scheme of things, not that big a deal.

It is mainly because this thing is on an exponential path. Some folks hate that word but that is the mathematical explanation. When something is doubling every 20 days or so, guess what, it is going to be 4 times bigger in 40 days or just over a month anyway.

The models for the international spread via airline travel are dealing with some of the same effects in the opposite direction. So simply DECREASING the travel from these countries simply delays the inevitable. But if there was a way to STOP ALL TRAVEL from these countries then it STOPS that vector as a method of spread. That is EXACTLY how the standard Ebola methodology of "IDENTIFY, ISOLATE and CONTAIN" works for stopping the previous outbreaks. This works in small villages where you can literally go in there and make this methodology work.

In its simplest execution, you IDENTIFY all of the infected cases and anyone that has come in contact with them and you ISOLATE (and treat to the extent you can the ones who are infected) and through this isolation (and the death or recovery of the people involved) you eventually CONTAIN the outbreak and stop the spread.

The problem is the genie is now out of the bottle in cities of thousands to millions in West Africa. IDENTIFY, ISOLATE and CONTAIN doesn't scale well. It works up to a few hundred people at most. Beyond 1,000 cases, as we are seeing in this outbreak, it overwhelms the people (cannot identify all of the cases or their contacts) and the facilities (for isolation) and thus it is proving impossible to contain.

Likewise with simply decreasing the air travel...it just delays the inevitable spreading....by only a few months. What the public and anyone with half a brain is now demanding is TOTAL ISOLATION of those travelers...do not let ANY of them from those countries on a plane...sick or not. NONE of them. That is the only form of pure ISOLATION you can do and hope for the desired results....CONTAINMENT of Ebola....to the continent of Africa.
 

willdo

Veteran Member
I agree Kris. The math agrees. I really wanted to find some redeeming projection that would explain why Obama is saying we can't cut off air flight to those countries. Are his advisers that bad at math? Everyone has made the case that cutting off air flight doesn't mean we stop sending them help. It is clear we are committed to doing that, it is the right thing to do. No one wants to see genocide by epidemic in those countries. We want to do whatever we can to help as many people survive as possible, maybe dramatically reduce that with a vaccine, if it really works and if we can produce enough of it quickly enough, and they can effectively distribute and administer it. I would really like to see a vaccine impact model overlaying the projection of the epidemic spread. I am guessing it might cut off the peak and cause a dramatic end to the spread, and certainly increase survival rates. Outside of a miracle vaccine intervention, these models, your models, everyone that has any math ability, can see we are past the point of preventing the spread in those countries, the virus has won that battle. The only thing we can do is impact their survival rates with support and the only way the virus doesn't win the same battle in every country is to immediately stop air flights out of those countries. If even the smallest outbreak occurs in Nigeria or Ghana, the international spread could take that option away in a heartbeat. We do not have any time left to make this decision. His adamant decision that we can't stop air flight doesn't make sense. It is THE only way to save the rest of the world from the same fate.
 

Kris Gandillon

The Other Curmudgeon
_______________
The only thing I have on estimating vaccine impact is this: http://www.ecdc.europa.eu/en/epiet/courses/Documents/06-Infectious Disease Epidemiology_2011.ppt on slides 30-32.

One key factor is that the lower the infection rate (Basic Reproduction Number) also know as R0, the lower the number of people that need to be vaccinated to achieve "herd immunity". The basic formula for how many must be vaccinated is 1-(1/R0).

What this shows is that for something like measles with a very high R0 of 16 then you have to vaccinate at least 94% of the people to have any hope of controlling or eradicating the disease.

Since Ebola is down in the R0 range of 2 to 4 then somewhere between 50% and 75% of the people in the area in question need to be vaccinated in order to control or eradicate Ebola in that region.

Vaccinating at these levels effectively brings the worst case R0 number down well below 1 which effectively stops the spread of the disease.

Also, those few (10% to 30%) that actually come down with Ebola and survive it have natural immunity at least to that strain of Ebola for years into the future.
 

willdo

Veteran Member
Thanks for tracking that down. That would be hard to accomplish, but not impossible if there is enough vaccine. The world is up against a time bomb with Ebola, that is for sure. Somehow the right people have to understand this. I have no idea who Obama is listening to, but they are giving him very bad advice. I want to believe he has his heart in the right place, and his brain has deferred his reasoning to trusting someone else for the math. I always give people the benefit of the doubt, even a president that I do not agree with on little, if anything. I still want to believe he thinks he is doing the right thing. Helping more people understand the math of this is important, it is not right or left or center, it is the law of numbers and it doesn't care about politics.
 

Gingergirl

Veteran Member
Willdo, I want to thank you for your research and analysis, and Kris for your follow up info.

Analysizing the assumptions that these models are built on is very helpful in understanding the spread of Ebola, implications for the growing epidemic, and current political decisions in the US.

If I understand the two of you correctly, a pandemic is assured. The genii is out of the bottle and the only anti-dote is to build a bigger bottle, i.e.. completely isolate these three countries (provided it is not too late as it has already become endemic elsewhere.) Such a thing would probably require an enormous international effort to completely seal what would be a very long border. (Note to Self: the US no longer has experience in sealing it's own borders)

Politically, I doubt there is the will right now to take such a drastic measure. I also assume that what would be quickly labelled as Genocide would not be an easy to sell to our president.

What would have been an easy sell by CDC and NIH was that Duncan was not a threat. Unlike the Liberia, the US had vastly superior knowledge and healthcare system to manage the problem, as the public and perhaps even the president were told repeatedly by Dr. Frieden of CDC. The shock and disbelief of the officials at the Dallas press conference announcing Nina Pham's diagnoses, and CDC's initial assurances that her infection was due to a protocol breach, reinforces my impression of their reliance on technology.

I have also noticed that whereas the disease was referred to by Frieden as Ebola- Zaire, he now only refers to it as Ebola...a silent admission that this is Ebola-Guinea with unknown protocols to prevent transmission and infection.

Unfortunately, the numbers/math may be self-evident, but the hubris at the CDC is likely what has been communicated to the president. The selection of Klain as Ebola Czar shows that the White House (perhaps under the influence of the CDC mindset) still regards the problem as a management problem rather than a medical problem, and managed properly, there will be no problem.

With the White House approach of management over medicine/science, any insight as to how much time we have before even a vaccine is too late?
 

willdo

Veteran Member
I was up all night studying the three models for the purpose of evaluating the decision on not banning air flight/travel. What I found is very sobering, tragic and in need of urgent correction and as a stubborn optimist, the next thing I want to study are vaccine models. Kris shared one but surely there are more out there.

Banning travel will give us more time but it will not eliminate the risk of spread. All one has to do is look at historic pandemics previous to methods of modern travel to see the virus always finds a way to escape. We must pursue that as a line of defense and prevention and we have a population that is in desperate need of a miracle now. There are companies out there working fast and furious to get their vaccines tested and in production.

In what I have seen reported about their efforts, there is a voice of concern about rushing what is an untested vaccine, both for safety and effectiveness. However, I think everyone in that industry recognizes what we are up against and while some may think they are only motivated by money, there has to be an equal or greater motivation based on knowledge of how many lives could be lost in a pandemic which this virus appears capable of taking on.

Canada seems to be the most confident about theirs, they have already administered it to humans in the US, and sent 800 vaccines to Africa. The Canadian company claims the vaccine will not only prevent infection, it will also treat an existing infection. It will be difficult to track in the short term whether a sample of people avoided infection because of the vaccine but much more apparent if a sample of infected people have an increased rate of recovery. A improvement in either of those two groups of people would be a blessing to the people of Africa.

There are many factors to consider on the question you ask, one of which is can they produce enough vaccine fast enough if it is indeed effective? I will see what I can find on production capabilities and application models. I have shared what I have shared here on my facebook page because I have a friend at the Pentagon that I know reads my analysis. I am praying that this kind of information breaks through to the people that can better advise the president.

Everyone who knows anyone in a position of influence in government or in the media needs to get this information out so that together the best decisions can be made on our behalf. Math models do no one any good if they are buried in a website never to be seen. Not every math model is going to be correct, and you have to look out for biases in their development. I am not a math person but I am seeing echos of the same conclusion in the different ones out there. None of them paint the whole picture, that is not possible from a variable standpoint, you have to overlay them and see how different variables in each fill in the gaps. We need to be searching for answers.

The president's decisions are only going to be as good as the people around him. He does not have the time to stay up searching for math models that are accurate. The people he is depending on are failing him and the American people. We have failed the people in those African countries. It breaks my heart to read and see pictures of people facing such odds. I think the president has probably been told how many millions will die there and he is frantic to do what he can as quickly as he can but he has to do it wisely or it will place the entire world at risk. The entire world is at risk, but his decisions can do the opposite of what he intends and speed up that risk rather than delay it and give us enough time to put it out.

Those countries must be isolated. That does not mean we don't continue to help them with everything we can. In the presidents comments it appears that he equates isolating those countries with cutting them off when that is not the purpose. Isolating those countries allows us to concentrate on helping them rather than being distracted by stopping what we hope will be mini-outbreaks all over the world because infected people are being allowed to travel. Isolating them doesn't mean the risk of escape is zero, it is already out trying to gain a foothold. Just consider the 800 airline passengers and crew and the 4000 on the cruise, the 70+ healthcare workers and untold numbers in Dallas that may have been exposed. We could have thousands in a matter of a month in a population that gives the virus access to modern travel and a vastly different social environment that is far more advantageous than the virus has gained in the cultural funeral rituals in Africa. Our modern "advances" may be more of a disadvantage despite our ability to treat and track it, our variables in mobility cancel that.

I am as conservative as they come, a constitutional libertarian is probably the closest label you could stick on me. This isn't about politics, this is about the real potential for millions, billions of lives to be lost, civilizations to be lost.
 
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Be Well

may all be well
I agree Kris. The math agrees. I really wanted to find some redeeming projection that would explain why Obama is saying we can't cut off air flight to those countries. Are his advisers that bad at math? Everyone has made the case that cutting off air flight doesn't mean we stop sending them help. It is clear we are committed to doing that, it is the right thing to do. No one wants to see genocide by epidemic in those countries. We want to do whatever we can to help as many people survive as possible, maybe dramatically reduce that with a vaccine, if it really works and if we can produce enough of it quickly enough, and they can effectively distribute and administer it. I would really like to see a vaccine impact model overlaying the projection of the epidemic spread. I am guessing it might cut off the peak and cause a dramatic end to the spread, and certainly increase survival rates. Outside of a miracle vaccine intervention, these models, your models, everyone that has any math ability, can see we are past the point of preventing the spread in those countries, the virus has won that battle. The only thing we can do is impact their survival rates with support and the only way the virus doesn't win the same battle in every country is to immediately stop air flights out of those countries. If even the smallest outbreak occurs in Nigeria or Ghana, the international spread could take that option away in a heartbeat. We do not have any time left to make this decision. His adamant decision that we can't stop air flight doesn't make sense. It is THE only way to save the rest of the world from the same fate.

It makes sense to 0vomit/his handlers/backers/string pullers. THey want to destroy the USA. It's really quite simple. It isn't "fair" the the US enjoys more power or better health care or anything.
 

Possible Impact

TB Fanatic
Willdo,

I've been posting Caitlin's links and papers for a while.
Caitlin Rivers posts regularly on twitter. https://twitter.com/cmyeaton


this is you second link you posted:

Modeling the Impact of Interventions on an Epidemic of Ebola in Sierra Leone and Liberia
http://currents.plos.org/outbreaks/...pidemic-of-ebola-in-sierra-leone-and-liberia/

:dot5: She has discovered that data used has some problems...

Caitlin Rivers @cmyeaton · Oct 17
Sierra Leone, if you didn't see 399 of 10,198 contacts, that is not 98% coverage.
Only 59% in WestAreaRural were seen, claim 99% #Ebola


Caitlin Rivers @cmyeaton · Oct 17
Also annoyed I didn't notice this before.
Lie-division is the reason I don't include CFR on Liberia data,
but fell for it with SL.



Caitlin Rivers @cmyeaton · Oct 17
So the Sierra Leone #Ebola contact tracing data is complete crap.
I am taking this quite hard.

Amy Champ ‏@AMYCHAMP Oct 17
@cmyeaton It's normal for Africa.
Very hard to understand.
Best to accept and keep on helping
despite the confounding numbers. Thank you!!!!


Caitlin Rivers @cmyeaton · Oct 17
.@AMYCHAMP unfortunately
that's not how epidemiology works.
The numbers are everything.

Caitlin Rivers @cmyeaton · Oct 17
Can someone else look too - am I crazy?
Just pick up a day or two and see if the SL contact tracing #s are square.
https://github.com/cmrivers/ebola/blob/master/sl_data/ …



Ardath ‏@ArdGrills Oct 17
@cmyeaton Nope not crazy
...not seeing the 98% either.


Caitlin Rivers @cmyeaton · Oct 17
.@ArdGrills it's not just lie-division,
the numbers are just literally meaningless.
 

willdo

Veteran Member
I am not surprised that someone here shared one of those models before. I am pretty sure the incubation model was shared here already, too. So, some of the underlying numbers she plugged into her impact model are incorrect which corrupts her results. The challenge is there probably isn't an accurate recording of numbers coming out of those countries by any agency. It just underlines the difficulty leaders are facing when trying to develop a strategy.

I doubt the model results are far off from the reality, the ground reports give us a real picture of the spread and effectiveness of combating it, which is not too effective at this stage for a number of reasons. It is doubling unabated. We have begun to throw support and pursue treatments and a vaccine as options but what they have been able to do, and what we have been able to do, isn't stopping the spread fast enough.

Common sense dictates that if we do nothing, there will be more loss of life. We can take the numbers reported, that aren't perfect, and plug them in as Kris has done to see what will happen. We can see the plain results of not banning travel, it allows infected people to spread it to other countries. We have seen how difficult that is to manage here even with all our supposed advantages.

The bottom line in all the models out there is that we have to isolate those countries to at least slow down the spread to other countries. We need more time to help them stem the loss of life and find a prevention/cure/treatment. If we end up having to fight outbreaks here, that means we have less resources to help them there. The virus has the potential to take us all down if we can't get ahead of it.
 
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