Nich1, It sounds like you caught this early in the process. If she is not experiencing a REALLY noticeable loss of coordination, and the muscle atrophy is not obvious at this point, you have the opportunity for a good outcome. Coupled with the fact that she is not a performance animal, I think she will recover very nicely with treatment.
Were she a high performance horse, or even a horse with an active recreational riding lifestyle, the recovery process is far more involved. Even at that, you caught it early, so she could have a good outcome for a return to athletic activities with a very dedicated and methodical exercise and rehab routine.
As an example....I had a student with a 17h, 9 year old ISH gelding who was eventing on a national level, doing 2nd level dressage, and competing in the 1.2m jumpers. His first symptom was a weird sweat pattern, with blotches of sweat in random places, and then totally dry in others. His rider did NOT share this with anyone when she first noticed it, because she didn't think much of it. Had she mentioned it right away, I would have been all over it.
About a week and a half after the sweating pattern appeared, I noticed in a lesson that he was developing "pitting" in his neck muscles, which looks like little divots in the muscle, as if one had pushed a knuckle into playdough and the impression remained. I knew right away what it was. It was then that she mentioned the sweating. We immediately called the vet, and were given an appt. 5 days out.
Over the 5 days, during which we took him out of work, the loss of coordination started. He struggled to turn one direction....I can't remember which, and was noticeably dragging a hind foot on that side by day 4. By day 5, there was a noticeable change of symmetry in his musculature, with the weak side clearly "flatter" when viewed from front and back. Remember, this was a VERY fit and well muscled horse when this all started. His symptoms appeared very rapidly from totally fine and competing every weekend, to clearly NOT ok and totally out of work, within a couple of weeks.
Vet came and told us what we already knew, and he was placed on a course of treatment. I honestly can't remember what we treated him with (it was at least 15 years ago!) but he was kept on stall rest with access to a small paddock during the next month. Once treatment was well underway, the vet cleared him for a rehab routine to begin.
We spent the next 6 months doing daily strength and coordination exercises. These included hand walking or ponying from another horse, starting with short distances of a couple hundred yards, gradually building up until he was doing several miles a day.
At the same time, he would have another session each day that involved exercises for flexibility. He learned ALL the carrot stretches, which he couldn't do at all on his weak side without nearly falling over when we started, as well as in hand work that focused on bending and walking small circles and lateral exercises in hand at the walk, such as leg yields, side passes, etc. We also did a lot of walk, halt, back, walk, transitions in hand. Daily vigorous grooming to increase circulation and stimulate the muscles was also part of the routine.
About 2-3 months in, he was showing signs of improvement, and we started some lunging work. We could have used a round pen, but he was higher than a kite by this point, and we did not want him tearing around and hurting himself, so we lunged him instead where we had more control. We started with parallel lunging, because he could not handle a circle very well in one direction, and this allowed us to "lunge" him using the whole perimeter of the ring rather than a circle. Trot work was added to his routine, with circles gradually introduced. Walk and trot ground poles were added around that time.
By 4 months we were upping the balance game, and ponying him over more hilly and uneven terrain. The hills were a bit of a kicker for him, and he struggled with balance, but we took it slow and persisted. His ground work became more intense, and canter work was introduced. We also started putting him back out with his buddies by this point.
At 5 months, we started riding him again, on flat, perfect, footing. He was nicely walk and trot both directions, with circles and ground poles, etc. We continued to pony him daily outside of the ring.
At 6 months the vet gave him the ok to return to whatever work we felt he was able to comfortably. We spent the next 6 months rebuilding his strength and getting him back into a "normal" riding routine.
At the one year point, we were able to have an honest re-evaluation of the situation. The decision was made that he was fully recovered on good footing, and was really his old self with his dressage work, though still stiffer and weaker on one side, but no more so than many horses without EPM. There were issues that he had not had previously, but all in all we were pleased. His jumping was fine over lower fences and on good footing.
The kicker was uneven ground, high speeds, or exercises that required a quick mind and quick feet. His mind was still quick, but it didn't translate well to his feet. I don't have to tell you that no one wants to travel at speed or jump big things on uneven terrain with a horse that has any sort of impairment.
The decision was made that his future, rather than the high octane xc machine he was, and was intended to be, that he was better suited to a life of dressage, jumping small fences (-3') on good footing, and leisurely trail rides on good ground. It was not worth the risk to horse and rider to try and do more, as we always felt that he was too high a fall risk if things got tricky.
He moved on (we couldn't sell him at that point, as EPM was not as treatable then as it is now, and even now most people don't want to mess with it. I don't blame them.) and was leased out to a rider who wanted to do exactly what he was able.
So, 12 months, countless hours of work, and a decently good recovery by veterinary standards, but still a high performance animal who was never able to return to that level of activity.
If you, or anyone, is interested, I could do a more detailed outline of his rehab work, but it sounds like your mare won't need it. You caught it before it became a serious issue, and she does not have a vigorous occupation that she is working to return to, so I bet you will have a great outcome! Still, stretches and ground work would likely help with rebuilding whatever strength, flexibility, and coordination has been lost. It would also help her recover fully in case you wish for her to engage in some performance activity in the future.
Good luck and keep us posted!