5/15/08- 5/22/08|Weekly Bird Flu Thread:Indonesia to give bird flu information online

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Indonesia to give bird flu information online

http://www.khaleejtimes.com/darticl...May/theworld_May624.xml&section=theworld&col=

15 May 2008


JAKARTA, Indonesia - Indonesia's health minister says she will give all genetic information about her country's bird flu virus to a new global database.

Experts say that will go a long way toward monitoring the disease that is threatening to spark a pandemic.

Indonesia has been withholding bird flu virus samples and DNA sequencing data from the World Health Organization for more than a year. It says the global body's 50-year-old virus sharing system is unfair to developing countries.

That has made it impossible for scientists to see if the virus was mutating to a more dangerous form.

Health Minister Siti Fadilah Supari says she decided to cooperate with the online databank that launched Thursday because it is fully transparent and protects intellectual property rights.
 

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Bird flu resistant to main drug stockpiled in Australia

http://www.theaustralian.news.com.au/story/0,25197,23702345-23289,00.html

May 15, 2008

PROMINENT mutations of bird flu are resistant to one of the main antiviral drugs Australia has stockpiled in case of an outbreak, new research reveals.
A report in Nature - an international weekly journal of science - has found common mutations of the H5N1 bird flu virus that have emerged in human influenza are resistant to the antiviral drug Tamiflu.

However, they are still "strongly inhibited" by an alternative drug Relenza.

Both drugs are commonly stockpiled but governments both in Australia and around the world have favoured the more convenient Tamiflu pill over the inhaled medicine Relenza.

Report co-author Alan Hay, from the UK's National Institute for Medical Research, says Tamiflu is useless against the mutations.

"The mutations cause resistance to Tamiflu but not Relenza," Dr Hay told ABC Radio.

"It's quite clear that there is greater potential for Tamiflu resistant viruses to emerge than was previously thought.

"Relying on a single drug is somewhat foolhardy when more than one drug is available."

Australia has stockpiled about 6.9 million courses of Tamiflu compared with just 1.8 million courses of Relenza, the ABC reports.

Dr Hay says one implication of the new research is that governments should stockpile greater courses of Relenza.

Although the H5N1 virus mainly affects birds, it has killed more than 200 people since 2003.

Scientists say it is the most likely source of the next deadly flu pandemic in humans as it may soon mutate into a form transmitted easily from person to person.
 

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SKorea to build bird flu vaccine factory next year: ministry

http://news.yahoo.com/s/afp/2008051...ea_080515092956;_ylt=A9G_RnusDCxIVocACRyTvyIi

SEOUL (AFP) - South Korea will build its own factory to produce human bird flu vaccine, health officials said Thursday as authorities battled the country's worst outbreak among poultry.

The factory will produce enough vaccine to treat 20 million people a year and will be built next year at Hwasun, 270 kilometres (160 miles) south of Seoul, the health ministry said in a report to parliament.

It also promised to secure enough stocks of the antiviral flu medicine Tamiflu to treat 10 million people by 2012.

The factory at Hwasun will be operated by local pharmaceutical firm Green Cross, which has been developing its own vaccine.

"Our vaccine still requires further clinical tests. We are trying hard to produce it at the factory at an early date," a Green Cross spokesman told AFP.

US authorities approved the first human vaccine, made by the French firm Sanofi Aventis, only in April 2007.

South Korea has culled more than 6.8 million chickens since its latest outbreak began on April 1. The ministry has reported 42 cases of bird flu at 33 places nationwide since then.

On Thursday quarantine authorities began culling another 1.5 million poultry in the two southeastern cities of Geongsan and Yangsan, where the potentially deadly H5N1 virus was confirmed to have caused earlier outbreaks.

No human infections have been confirmed in South Korea even though the H5N1 virus has killed more than 240 people worldwide since late 2003.

But the discovery of the H5N1 strain in the capital Seoul and other major cities has fuelled fears of possible human victims.

The agriculture ministry is restricting the distribution and sale of live poultry for human consumption. It has already banned the butchering of chickens and other poultry at traditional markets.

In the country's 2003-2004 outbreak, 5.28 million birds were culled while a 2006-2007 outbreak resulted in 2.8 million birds being destroyed.
 

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Bird flu drugs 'poured down the drain'

http://www.stuff.co.nz/4550073a11.html

Thursday, 15 May 2008

Nearly $1 million worth of antibiotics was being poured down the drain after drugs, bought in case of a bird flu pandemic, had expired, National MP Tony Ryall said.

Health Minister David Cunliffe said in response to written parliamentary questions that the oral liquid antibiotic, Amoxycillin Clavulanate 250mg, which was known to have a relatively short shelf life, had expired in January this year.

These antibiotics had cost $847,875 to buy.

Mr Cunliffe also said that 103, of the 1229 treatment courses of Tamiflu the Government had purchased, had also expired.

These courses cost $300,000 excluding GST, he said.

Mr Ryall said the $847,875 worth of antibiotics was "a fifth" of the national stockpile of pandemic plan antibiotics.

"The New Zealand taxpayer is not only subsidising cheap medicines for tourists and some overseas students, but apparently the country can afford to waste nearly $1 million worth of antibiotics as well," he said.

The antibiotic had a two-year shelf life so it could "and should" have been rotated as Pharmac had promised it would be, Mr Ryall said.

In statement in June 2006, the Government's drug buying agency Pharmac said while antibiotics did not offer protection against influenza viruses, it anticipated the supplies of antibiotics being used in cases of secondary bacterial infections.

It said purchasing the drugs would cost district health boards $4.6 million.

Pharmac's medical director Dr Peter Moodie said at the time that DHB hospitals had agreed to manage rotation of the stocks in order to minimise stock expiry.

Pharmac would also be monitoring stock levels and expiry dates and running further purchasing programmes to maintain the levels of stock as needed.

In this way as little stock as possible should expire, he said.

Former health minister Pete Hodgson today told Parliament that when the country was preparing for a possible pandemic, a decision was taken to have a "surge capacity of, especially, injectable antibiotics and Tamiflu brought into the country in the knowledge that if there was no pandemic, they would be wasted".

Mr Hodgson said the budgetary process for doing so was clear and transparent at the time and was made public.

Earlier this week, Consumer NZ chief executive Sue Chetwin said many people on visitors or students permits were getting subsidised pharmacy medicines they were not entitled to at a cost to the taxpayer.
 

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H5N1 Clade 2.3 in Japan Signals Global and Genetic Expansion

http://www.recombinomics.com/News/05150801/H5N1_Japan_Fujian_Expansion.html

Recombinomics Commentary 05:21
May 15, 2008

it differs from the virus which in the past is verified in the country, presently has become popular in Indonesia and Vietnam

The above comments on the H5N1 in whooper swans in Japan indicate clade 2.1 or clade 2.3 has moved into long range migratory birds. Comments from South Korea on similarities between the H5N1 there and H5N1 in Vietnam suggest that H5N1 in both countries is clade 2.3 (Fujian strain). Although movement of H5N1 via migratory birds in eastern Asian is not well defined, and elaborate distribution route in areas west of China has been defined by surveillance and analysis of clade 2.2.

Clade 2.2 was initially reported at Qinghai Lake in central China in May, 2005. The spread outside of China was first reported in outbreaks in Siberia and Mongolia in the summer of 2005. The high concentration of H5N1 in long range migratory birds suggested H5N1 would migrate into Europe, the Middle East, and Africa, where it had never been reported previous. These predictions were confirmed by reports of H5N1 in these regions in late 2005 and early 2006. All isolates were clade 2.2, which was also found in south Asia in India, Afghanistan, and Pakistan.

In the summer of 2006 a new wild bird outbreak was reported at Uvs Lake in Mongolia. This clade 2.2.3 strain was subsequently migratyed to the east in South Korea and Japan in late 2006 and early 2007. The Uvs Lake strain also migrated to the west, and was reported in Kuwait in early 2007. Although there were few reports of H5N1 in Europe in late 2006 and early 2007, outbreaks were reported in the Czech Republic, Germany, and France in the summer of 2007. All outbreaks were the Uvs Lake strain, which was subsequently widely reported in Europe and Saudi Arabia at then end of 2007.

Although there was considerable heterogeneity in the H5N1 in circulation, all isolates were clade 2.2. The reports of clade 2.3 in whooper swans in Japan and poultry in South Korea raises concerns that the clade 2.3 will follow the paths of clade 2.2 and increase the geographical reach and genetic complexity of H5N1.

The outbreaks in South Korea are at record levels and the locations in Japan are further north than prior outbreaks. The detection of these outbreaks in late spring raises concerns that the H5N1 was brought into the area recently by birds migrating north in the East Asian flyway. Japan and Korea are within intersecting flyways that can move the clade 2.3 into Siberia and Mongolia, while northern movement along the east Asian flyway would move clade 2.3 into North America.

The mixing of clade 2.2 and clade 2.3 in migratory birds could lead to significant recombination and genetic drift, which may then move into new regions as evidenced by the new locations in Japan and the high concentration of H5N1 in South Korea.

Primorie has already reported H5N1 for the first time and its proximity to South Korea and Japan raise concerns that clade 2.3 has already moved into Russia. Details on the sequence of the H5N1 in Russia would be useful.

Enhanced surveillance in Russia and Mongolia, as well as Alaska is warranted by these new movements of H5N1 and the first reports of clade 2.3 in Japan and South Korea.
 

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Bird Flu Update in India

http://www.thepoultrysite.com/poultrynews/14901/bird-flu-update-in-india

INDIA - The Indian government has announced the current situation in Tripura and West Bengal. The central team is monitoring the containment operations.

West Bengal

According to the report culling operations started on 10.5.2008. 125 Cullers/Veterinary staff are under medical observation and continue to be on chemoprophylaxis with oseltamivir.

Active surveillance, started on 11.05.08, has covered 37 villages with a population of 23,875 in the 0-3 Km area and 42 villages and 10647 population in the 3-10 km area. A total of 47 (30 in 0-3 km and 17 in 3-10 km area) cases of fever and upper respiratory tract infection have been detected. None of them have contact with sick/ dead poultry.

In the identified health facility 36 cases of fever and upper respiratory tract infection have reported. One patient of fever with URI case is admitted. None of them have exposure history.

Awareness programme on avian influenza is continuing in the affected area through miking, pamphlet distribution and posters jointly by Animal Health and Human Health Departments.

There is adequate stock of oseltamivir and PPE with the District authorities.
Tripura

Central RRT is assisting the State authorities. House to house surveillance by health workers is continuing. A population of 20274 has been covered in 0-3 Km area. No case of fever and URI has been reported in the population under surveillance. In the 3-10 km area a total of 25954 population is under surveillance and 5 cases of fever with URI were detected. None of them had history of exposure to sick poultry.

151 Animal Health Workers are under medical supervision and are under chemoprophylaxis. There is no suspect case of human avian influenza.

The situation is being monitored.
 

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Bird Flu Alert Sounded in Jhapa

http://hamropalo.com/nepal_news/bird-flu-alert-sounded-in-jhapa.html

Jhapa district administration office has sounded alert to prevent bird-flu after the disease appeared in the Indian districts bordering Nepal.Assistant Chief District Officer Laxman Prasad Hamal said a committees involving five poultry entrepreneurs and a security personnel has been formed in the areas where where veterinary service centres are available.The committees would spread awareness about the disease and ban import of chicken, ducks, vaccines and food grain according to Assistant CDO Hamal.He said special measures have ...

been taken to monitoring the possible spread of the disease in the bordering areas like Kakadbhitta, Prithvinagar and Bahundangi of Jhapa.A team of officials from the Veterinary Service Department has reached the district to check the rising threat of spread of the disease due to importation of bird-flu in Jhapa.Meanwhile, the Inaruwa temporary police post on Thursday destroyed 50 crates of eggs illegally imported from India on the suspicion of bird flu contamination.The eggs were seized yesterday were buried underground in the presence of four representatives of the Animal Quarantine Check Post Sirsiya.Earlier, the police post also had seized 175 broiler chickens and buried them, ASI Buddhi Chaudhary at the temporary police post Inaruwa told this daily.
 

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Bird flu confirmed in Bijanbari

http://www.thestatesman.net/page.news.php?clid=10&theme=&usrsess=1&id=204174

SILIGURI, May 15: The H5N1 strain of avian influensa has surfaced in Bijanbari Block in Darjeeling sub-division.

According to the Darjeeling DM, Mr Rajesh Pandey, the Bhopal based High Security Animal Disease Laboratory (HSADL) has confirmed the outbreak after testing the samples sent from Bijanbari on 11 May.

“The HSADL report has reached us today. A meeting of the officials concerned has been convened at the Darjeeling district collectorate tomorrow and hopefully, we would be able to begin culling operations from Saturday,” Mr Pandey said.

With the flu outbreak at Bijanbari, the number of bird flu hit sub-divisions in the hills has now raised to two. Earlier on 8 May, bird flu was confirmed in a few fringe villages of Mirik Block in Kurseong sub-division.

The Matigara and Naxalbari Blocks in Siliguri subdivision were also declared bird flu hit on the same day.

Meanwhile, the mopping up drive at Matigara, Naxalbari and Mirik Blocks concluded today. According to the state Animal Resource Development department, a total of 3,138 fowls were culled in the three affected blocks on the first day of the mopping up drive yesterday. This has raised the number of bird culled in the area to 28,410 since 14 May. Today’s figures were yet be compiled, ARD officials said.
 

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H5N1 Clade 2.3.2 in Korea Raises Pandemic Concerns

http://www.recombinomics.com/News/05160801/H5N1_Korea_232.html

Recombinomics Commentary 15:42
May 15, 2008

H5N1' Elder brother virus ' 2.3.2' Was confirmed as the channel virus

The above translation confirms that the H5N1 in South Korea is the Fujian sub-clade 2.3.2. This sub-clade has the HA cleavage site of RERRRKR and the most recent clade 2.3.2 isolate in the phylogenetic tree in the WHO vaccine target update is A/common magpie/Hong Kong/645/2006, which is among the Fujian isolates that annually appear in Hong Kong around the beginning of the year.

This identification increases the likelihood that the H5N1 in South Korea and Japan this season is linked to the northern migration of wild birds infected with clade 2.3.2 from the south. Movement of clade 2.3.2 into areas where clade 2.2 has been reported would result in recombination and acquisition of clade 2.2 polymorphisms. Analysis of newly acquire polymorphisms in the above isolate indicates that most are shared with clade 2.2 isolates.

The report of clade 2.3.2 in whooper swans in Japan increases the likelihood that these type of exchanges will increase, and clade 2.2 migrating into Europe, the Middle East, and Africa will have additional clade 2.3.2 polymorphisms. Moreover, the report of 2.3.2 in South Korea and northern Japan increases the likelihood that clade 2.3.2 will migrate into areas where clade 2.2 was reported previously, as well as Alaska, which lies within the East Asia flyway that is delivering clade 2.3.2 to Korea and Japan.

The finding of clade 2.3.2 in Korea and northern Japan significantly increases pandemic concerns and the likelihood that H5N1 will once again significantly expand its global reach and genetic diversity.
 

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Victims' neighboorhood H5N1-free

http://www.thejakartapost.com/news/2008/05/17/victims039-neighboorhood-h5n1free.html

Mustaqim Adamrah , The Jakarta Post , Jakarta | Sat, 05/17/2008 11:15 AM | City

The city's husbandry, fishery and maritime agency said Friday it did not find the H5N1 virus in any fowls found in the neighborhood of the latest suspected bird flu victims.

Agency head Edy Setiarto said samples taken from poultry in the Gandaria Utara, South Jakarta, showed negative results.

"We took the samples Thursday and had them examined in our lab in Ragunan, South Jakarta, after scanning an area in the subdistrict with a radius of 100 meters," he said.

"We found out later that day the tests were negative," he said.

The agency also culled backyard poultry in the area during the inspection, he said.

"We have finished culling poultry on the subdistrict level," said Edy.

"The Jakarta husbandry, fishery and maritime agency will continue culling poultry in the whole Kebayoran Baru district."

The procedure, he said, would be finished by the end of this month.

Edy said the agency is trying to determine where the virus might have come from.

Jakarta Health Agency head Wibowo Sukijat said his agency was testing blood samples taken from people who had contact with the suspects before they died.

"We don't know when the tests will be finished," he said at City Hall.

Sixteen-year-old Istiqomah died Wednesday after being treated at Persahabatan Hospital, East Jakarta, for having respiratory problems, a cough and a fever.

Her nails on both her hands and feet had turned blue.

Doctors confirmed Istiqomah died of bird flu, Koran Tempo reported Friday.

On May 4, Istiqomah's brother Ahmad Rizki, 15, died at Prikasih Hospital in Pondok Labu, South Jakarta, after showing similar symptoms.

Doctors at the hospital, however, said Ahmad was suffering from typhoid.

Wibowo said blood samples from Ahmad showed he was not infected by the bird flu virus and thus confirmed the doctors' claim.

A family member of the victims, Alamsyah, 24, is now being treated at Persahabatan Hospital with bird flu-like symptoms.

The country has seen 135 human cases of H5N1 infection and a death toll of 110.

The latest confirmed case of death from bird flu was in Sumedang, West Java, on Thursday.

West Java, Banten and Jakarta have been the most hard-hit by the infection.
 

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Authorities ask people to be alert about 'bird flu'

http://www.nepalnews.com/archive/2008/may/may17/news01.php

The authorities have appealed to the general public to apply maximum caution to prevent the entry of 'bird flu,' which has been detected in bordering Indian region.

Issuing a notice, Saturday, the Department for Livestock Service has said that recently the disease has been detected in Darjeeling and Kurseong region of India, which borders with eastern Nepal.

It has urged the poultry traders, farmers, and general public not to bring in birds from across the border, which the government has already banned.

It has also urged them to transport birds and chicken within the country only after receiving proper health certificate.

The authorities have urged the people to immediately notify if they hear about sudden death of birds or chicken in large number in any place. nepalnews.com sd May 17 08
 

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Bird Flu Hits Chicken Restaurants Hard

http://www.koreatimes.co.kr/www/news/biz/2008/05/123_24361.html

By Kim Tae-jong
Staff Reporter

Han Gi-seok, 60, the owner of a famous samgyetang or chicken soup restaurant in central Seoul, showed frustration as more than 100 seats gathered dust at lunch time Friday.

Gogu Samgyetang, one of the most famous restaurants in the bustling office town, has been deserted for weeks following the outbreak of avian influenza that swept across the nation. Normally, it's hard to find a vacant seat during lunch hour and one has to wait in line to be served. Samgyetang is a traditional chicken soup boiled with ginseng and glutinous rice.

``The last time we experienced such bad business was when we opened the restaurant 30 years ago,'' Han sighed. ``This afternoon, we had only six customers.''

President Lee Myung-bak and many top government officials ate samgyetang in front of the cameras in a gesture to ensure the public of the safety of boiled chicken. But most citizens are staying away from dishes made of chicken, duck and any other bird-related foods.

Experts as well as the government say that it is safe to eat boiled chicken and duck as the virus cannot survive high temperatures of 80 degrees Celsius. But their appeal has failed to regain diners.

``I know it's safe to have chicken. But seeing chickens and ducks killed and buried every day on television doesn't stimulate the appetite for chicken or duck,'' Kim Hye-kyoug, a 34-year-old office worker, said.

Many restaurant owners hope that the public scare of bird flu will pass before the upcoming peak season in summer. About 30 percent of chicken dishes are consumed in July and August as it is enjoyed in preparation for the hot season.

Some restaurant owners, pushed to bankruptcy, are seriously considering changing their businesses.

``Even before the outbreak of bird flu, it was hard to run a shop due to the prolonged economic downturn. The bird flu was like the last nail in the coffin,'' said Choi Han-kyu, 53, owner of a chicken restaurant chain, Two Two Fried Chicken.

Before the outbreak, he used to sell up to 50 chickens a day but the number has dropped to 20, Choi said. ``We are tolerating a lot of difficulties. I don't know how long we can survive,''

Han also sees little prospects of improvement in the near term, lamenting almost no concern from the government.

``I know poultry farmers will get some government aid. But who will help restaurant runners?'' Han said.
 

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SKorea mobilises troops for bird flu fight

http://news.yahoo.com/s/afp/20080518/wl_asia_afp/healthfluskorea

SEOUL (AFP) - South Korea on Sunday mobilised army soldiers for the second time to help battle an outbreak of bird flu, which has already led to the culling of more than seven million poultry, officials said.
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About 200 soldiers helped kill more than 310,000 chickens and other poultry in the southeastern city of Yangsan hit by the H5N1 virus, the agriculture ministry said.

Hundreds of soldiers had already been deployed to help destroy infected birds, but were called back to their barracks last month after one soldier showed possible bird flu symptoms. He was later found to be healthy.

South Korea has been battling its latest outbreak of avian flu since April 1. The agriculture ministry has since reported 42 cases of bird flu at 33 places around the country.

No human infections have been confirmed in South Korea even though the H5N1 virus has killed more than 240 people worldwide since late 2003.

But the discovery of the H5N1 strain in the capital Seoul and other major cities has fuelled fears of possible human victims.

The government is restricting the distribution and sale of live poultry for human consumption. It has already banned the butchering of chickens and other poultry at traditional markets.

In the country's 2003-2004 outbreak, 5.28 million birds were culled while a 2006-2007 outbreak resulted in 2.8 million birds being destroyed.
 

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Glaxo Wins Approval to Sell Pre-Pandemic Flu Vaccine

http://www.bloomberg.com/apps/news?pid=20601102&sid=a2g4snFNOV2o&refer=uk

By Andrea Gerlin

May 19 (Bloomberg) -- GlaxoSmithKline Plc, Europe's largest drugmaker, won European Union permission to sell its pre-pandemic flu vaccine, the first approval in the region of a shot to prevent an outbreak sparked by the deadly bird flu virus.

The vaccine, called Prepandrix, was cleared for sale in 29 countries to protect people against the virus before or at the beginning of a pandemic, London-based Glaxo said today in an e- mailed statement. The European regulator's advisory panel recommended adopting the product in February.

``This is a vaccine that can be produced in advance of a pandemic, that can be stockpiled ahead of a pandemic, which really allows governments to be ready in the event of a pandemic,'' Emmanuel Hanon, director and vice president of the influenza vaccine franchise at Glaxo's GSK Biologicals in Rixensart, Belgium, said in a telephone conference with reporters on May 14.

Governments are trying to prepare for a possible pandemic caused by the fatal H5N1 strain of bird flu that has spread across Asia to Africa, the Middle East and Europe since 2003. Makers of the vaccines are seeking a share of a $1 billion to $2 billion potential market, analyst Andrew Fellows of Helvea in London said last year.

Glaxo has invested about $2 billion in flu vaccine manufacturing capacity and is going to double production at factories in Germany and Canada to 120 million doses at each site, Hanon said.

The drugmaker has orders for Prepandrix from the U.S. and Switzerland and other governments Hanon declined to identify. It doesn't plan to sell the vaccine directly to consumers, he said.

The avian influenza virus has killed 241 of the 382 people it's known to have infected since late 2003, the Geneva-based World Health Organization said on April 30. Most of the cases followed close contact with birds.

Glaxo shares rose 4.5 pence, or 0.4 percent, to 1,143.5 pence as of 8:43 a.m. in London trading.
 

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Ten areas in Jhapa prone to bird flu

http://www.gorkhapatra.org.np/detail.php?article_id=462&cat_id=4

The District Livestock Office, Jhapa, has declared ten places of the district as high-risk and sensitive zones, and took initiative to remain alert of bird flu hazard.
Chief of the Live Stock Office, Dr Dilip Sapkota, said they listed ten places bordering India under high-risk zones as birds and other avian products are imported and has direct contact in these places.

Places under high-risk zones are, Sanischare, Budhabare, Charali, Kakadbhitta, Prithvinagar, Pathivara, Gaurigunj, Anarmani, Damak and Surunga, he added.
In the places bordering to India as Patharghatta and Painakumari among others were detected with bird flu, there is strict inspection and high alert to not import the birds and avian products, it is said.
 

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World warned about three major threats to human health

http://www.news-medical.net/?id=38472

Organization (WHO) has issued a warning concerning major threats to human health.

According to the United Nations body that there are three clear main events which could threaten international security - food shortages, climate change and an influenza pandemic.

The Director-General of WHO Margaret Chan, says these three critical events have the potential to undo much hard won progress in public health.

The Director-General issued the warning at the opening of the 61st session of the World Health Assembly, the organisation's top decision-making body.

The WHO has identified 21 "hot spots" around the world which are already experiencing high levels of acute and chronic malnutrition and Ms. Chan says the aim of an international task force on the global crisis caused by soaring food prices, is to guide priority action.

An estimated 3.5 million deaths a year are caused by under nutrition, says the WHO and poor households spend on average between 50 and 75 per cent of their income on food.

Ms. Chan says the more spent on food means less money is available for health care.

She says that droughts, floods and tropical storms add to the demands for humanitarian aid and create a growing number of environmental refugees where the poor are again the most vulnerable and climate change is already adding an additional set of stresses in areas that are already fragile.

Ms. Chan says the third global crisis looming on the horizon is a pandemic triggered by the spread of bird flu to humans and the threat has by no means receded - all countries will be affected in a rapid and sweeping way, and to let down our guard, would be very unwise.

Ms. Chan has warned that the international community should not become complacent about the threat of bird flu.

Also expected to be discussed by the World Health Assembly are female genital mutilation (FGM) and the harmful use of alcohol.
 

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Pandemic May Require Cocktail of Drugs to Combat

http://hstoday.us/index.php?option=com_content&task=view&id=3428&Itemid=149

Our study suggests that stockpiling a single drug ... might not be sufficient if we are faced with a pandemic'

Steve Gamblin of the National Institute for Medical Research in London and other British bird flu experts warned this week that governments need to stockpile antivirals besides just Tamiflu (oseltamivir) because of evidence that a mutated strain of H5N1 is resistant to Tamiflu.

Consequently, a bird flu pandemic could produce strains that also are resistant to Tamiflu, which has been considered by public health authorities around the world to be the most effective antiviral for combating H5N1 and other bird flu infections in humans.

"What this research shows is that stockpiling any one drug to prepare for a potential H5N1 pandemic is unlikely to provide adequate cover," Gamblin was quoted saying, adding, "in order not to be outflanked by the virus, it will be necessary to have stocks of both existing drugs."

“Mutations arising which have a selection advantage are very quickly exploited [by the virus],” Gamblin said, noting, “our study suggests that stockpiling a single drug, oseltamivir, might not be sufficient if we are faced with a pandemic.”

In February, the World Health Organization (WHO) reported that some seasonal flu viruses – which in the US mutated into several strains authorities weren’t prepared for and which the season’s vaccines weren’t designed for – were growing resistant to Tamiflu. WHO pointed to a study which showed high levels of resistance to Tamiflu in parts of Europe.

In addition, WHO reported that Australia, Hong Kong, North America, and parts of Europe also reported finding seasonal influenza viruses that had developed resistance to the drug.

In North America, WHO found the main seasonal virus in circulation showed "elevated resistance" to Tamiflu.

WHO spokesman Gregory Hartl said the organization was surprised to see the high levels of resistance in the study, which focused on the A H1N1 viruses circulating last winter in Europe.

Tamiflu resistance is a growing concern among health authorities because it is the most effective antiviral against H5N1, the strain many virologists fear is the most likely bird flu to mutate into a human transmissible form, triggering a pandemic.

A preliminary survey by the European Center for Disease Control (ECDC) said that of 148 samples of influenza A virus isolated from ten European countries in November and December 19 showed signs of resistance to the drug.

WHO expert Dr. Frederick Hayden said “based on initial reports, it is not a global problem now but it is a global concern.”

WHO further said that it was not changing its recommendations that Tamiflu be used as the first drug to treat, prevent, and contain a pandemic flu.

But given that Tamiflu – which is not a vaccine and will not prevent sickness or death in all cases – is expected to be heavily administered, even as a prophylactic, during a pandemic - health officials are extremely worried that intense use will accelerate resistance.

Brit Oiulfstad, the pandemic influenza coordinator for the County of Los Angeles, told HSToday.us that she and other authorities “are concerned about … the current push for community-wide antiviral prophylaxis when the effectiveness for such long-term use (several times the duration of the recommended treatment period) has not been evaluated.”

Even the Centers for Disease Control and Prevention (CDC) community mitigation guidance cautions that “it is not known if influenza antiviral medication will be effective against a future pandemic strain.”

The federal government’s pandemic plan calls for “targeted antiviral prophylaxis … of disease clusters, administration of antiviral treatment to persons with confirmed or suspected cases of pandemic influenza and provision of drug prophylaxis to all persons in [an] affected community.”

Oiulfstad noted that heavy reliance on antivirals is “even more troubling when we are currently dealing with the effects of overuse/misuse of antibiotics.”

The government’s pandemic plan makes note of this concern: “CDC will work with state and local partners to monitor the development of resistance to antivirals … resistance may develop rapidly if these drugs are used widely.”

“Planning for antivirals is very complex as we are not certain that the current antivirals will be effective in whatever viral strain will be circulating,” Oiulfstad said. “However, planning for any pharmaceutical dispersal is good for other future events. In Los Angeles County, planning for antiviral use and distribution is going well as our overall goal is to use antivirals in medical settings to reduce serious illness and death among cases, not general prophylaxis.”

Oiulfstad added: “We do not know the effects of long-term antiviral use in a prophylactic setting. Therefore, we always consider that we must do no harm, and until we have some more answers, we proceed on those recommendations for prophylaxis with great caution. Until the science is in that shows that these drugs prevent illness, this seems to be the only reasonable way to approach the problem.”

According to the British researchers, while both H5N1 and seasonal flu could develop resistance to Tamiflu, the viruses appear to be highly susceptible to Relenza, another drug used as an antiviral for treating infected persons.

Gamblin said the best way to treat flu victims in the long term may be with three or four antivirals and a vaccine; whether the vaccine is one specifically designed for the strain of flu a person has contracted.

A new antiviral, peramivir, is under developed by Biocryst Pharmaceuticals. However, it must be injected and reports state it hasn’t performed well in clinical trials. Two older flu drugs are available but flu viruses have quickly developed resistance to them. They might, though, be useful in combination with use of several other antivirals as Gamblin suggested.

Meanwhile, a vaccine that could offer some protection from H5N1 and its mutations is being developed by Purdue University and CDC researchers.

The vaccine has been effective against H5N1 for a year or longer in mice, but it has not been tested in humans.

"In humans, we want a vaccine to be fully effective for at least a year," said Suresh Mittal, a Purdue virologist and professor of comparative pathobiology. "How long it will last in humans we don't know yet."

Last month, Sanofi Pasteur delivered to the US Department of Health and Human Services 38.5 million doses of a vaccine designed for an emerging strain of H5N1.

Although the only truly effective vaccine for a virus is the one that is made for a specific strain, some studies have suggested – and some scientists believe – that any H5N1 strain vaccine inoculation could provide some level of protection against another strain a vaccinated person is infected by.
 

JPD

Inactive
Japan Swan H5N1 Linked to Wild Birds in Hong Kong

http://www.recombinomics.com/News/05200801/H5N1_Japan_Hong_Kong.html

Recombinomics Commentary 11:07
May 20, 2008

The release of sequences from all eight gene segments of whooper swan isolates from Japan allows for phylogenetic analysis. Phylogenetic analysis is used to assign the sequences to related sub-clades, and an analysis indicates the HA sequences from the Hokkaido isolates are clade 2.3.2. They lie on a branch that is rooted with sequences from Vietnam collected in 2005. However, the 2008 sequences have evolved markedly from these 2005 sequences and map to a location similar to the clade 2.3.2 vaccine target, A/common magpie/Hong Kong/5052/2007. This 2007 isolate from a dead wild bird in Hong Kong> H5N1 infected wild birds appear annually near the beginning of the year in Hong Kong. Although the sequence has been withheld, it is mapped in the WHO report on vaccine targets. The phylogenetic tree helps fill in the gap between the 2005 isolates in Vietnam (most of which also have M230I) and the 2008 isolates in Japan. This gap would likely be filled by the other wild bird isolates from Hong Kong in 2007 / 2008 which are being hoarded in the WHO private database, which is password protected and only available to a small group of WHO consultants.

The NA sequence of the recent isolates from Japan map with clade 2.3.4 isolates, and are most closely related to a human isolate from Guangdong province, A/human/China/GD02/2006. This isolate is not included in the WHO phylogenetic tree, but is on the branch with other wild bird isolates from Hong Kong in 2006, including A/chicken/Hong Kong/282/2006, which is on the WHO tree in the pandemic vaccine report. Other isolates on that branch (but not listed in the WHO report) include A/magpie robin/Hong Kong/75/2006 and A/magpie robin/Hong Kong/366/2006. Thus, although the NA sequences map with another Fujian sub-clade (2.3.4), both sequences are traced to magpie isolates in Hong Kong in 2006 or 2007.

The tracing of the whooper swan sequences in Japan back to the magpie sequences in Hong Kong helps define the migration path of H5N1 sequences in eastern Asia. In the past this mapping has been hampered by the emphasis on poultry and trade and the discounting of wild birds. However, earlier sequences from isolates collected at wet markets in South Korea in 2003 had clear examples of recombination which involved sequences from South Korea and Hong Kong. Although several examples of recombination were withheld, those released had clear examples in multiple genes.

Thus, like clade 2.2 sequences which are transported and transmitted by wild birds migrating in Europe, the Middle East, and Africa, as well as resident wild birds which maintain local versions of H5N1, migratory and resident birds in eastern Asia also control the movement and evolution of H5N1.

This phylogenetic analysis provides additional evidence for movement via the East Asian flyway, which connects H5N1 in Indonesia, southeast Asia, and eastern China, with Japan, South Korea, eastern Russia, and Alaska. The migration on this flyway also helps explain the North American PB2 sequences in the whooper swan isolate from Japan.

Thus, the mapping of the movement of viruses and individual polymorphisms is facilitated by a robust database, and is inhibited by the hoarding of sequences, including those selected as pre-pandemic vaccine targets.

The time for releases of the sequences hoarded by WHO and their consultants has long since passed.
 

JPD

Inactive
Bird flu alert in Tebo regency

http://www.thejakartapost.com/news/2008/05/21/bird-flu-alert-tebo-regency.html

JAMBI: The highest bird flu alert status has been declared in Rimbo Mulyo village in Rimbo Bujang district, Tebo regency, Jambi province, during the past three days after the sudden deaths of thousands of domestic birds in the area.

The alert means local people, especially those living on Jalan 15 and Jalan 23, where the sudden deaths occurred, are obliged to report to the local community health center every hour as a precaution.

The regency health office has set up a special task force to anticipate the possible transfer of the bird flu virus to humans by conducting door-to-door health checks.

"We're also calling on all members of the community to report to the community health centers should their neighbors, friends or family members become sick," head of Tebo health office Haflin said Tuesday.

Haflin said his office has worked hand in hand with the husbandry office to take preventive measures including providing vaccines, spraying disinfectant and culling possibly infected poultry.

Disinfectant has been sprayed and medicine distributed within a 1 kilometer radius of the areas where the sudden deaths occurred, head of Tebo husbandry office Alfred said. -- JP
 

JPD

Inactive
Asia cradle of flu virus

http://lifestyle.in.msn.com/health/article.aspx?cp-documentid=1409672

Studying 13,000 flu samples from around the world, a team of researchers has come to the conclusion that Asia is the cradle of the flu virus
Asia cradle of flu virus

Washington: University of Cambridge researcher Derek Smith, who was doing his PhD at the Santa Fe Institute when the project began, says that new virus varieties evolved in Asia, and then spread to Europe, Australia, North America and finally to South America through travellers.

He has revealed that data about the flu samples studied were based on the information that the World Health Organization Global Influenza Surveillance Network collected from 2002 to 2007, keeping track of when and where different strains of the virus popped up.

He says that the WHO experts had also analysed the shape differences between the proteins used by each virus to bind to human cells, along with the genetic makeup of each virus.

Smith and his colleagues used that data to create an “antigenic map” that visually showed the relationships between all the different viruses, and allowed the research team to determine the migration patterns of the virus around the world.

“This work is highly multidisciplinary, with epidemiologists, computer scientists, computational biologists, mathematicians, virologists, immunologists, geneticists, veterinarians, and MDs. It was made possible by collaborations with people from all of these disciplines,” Smith said.

He believes that this work may help improve the efficacy of the present-day flu vaccines.

Smith says that the flu virus is constantly evolving, and thereby making it difficult for scientists to update the vaccine.

He says that scientists need to decide on a formulation a year in advance of when the flu will actually hit, to allow time for the vaccine to be manufactured and administered.

And for this, he adds, they have predict which of the strains of flu virus are going to be causing the most disease a year down the line.

“In order to try to predict how flu viruses might evolve, we have to understand how they’re moving around the world and where they’re evolving,” says Smith.

The new findings have been published in the journal Science.
 

JPD

Inactive
H5N1 M230I Migration in East Asia

http://www.recombinomics.com/News/05200802/H5N1_M230I_Migration.html

Recombinomics Commentary 14:37
May 20, 2008

The presence of M230I in the two HA sequences from whooper swans in Japan help define a migration pathway connecting Japan to Hong Kong. M230I has attracted attention because it is one of two receptor binding domain changes in the Gharbiya cluster, which is the largest confirmed cluster to date in Egypt. M230I was also found in additional cases in the 2006/2007 season in Egypt and all cases with M230I were fatal. Moreover, M230I is present in all three strains of seasonal flu (H3N2, H1N1, influenza B) raising concerns of H5N1 adaptation in humans.

All reported H5N1 isolates west of China have been clade 2.2. The first report of M230I in clade 2.2 was from an eagle owl in Germany in 2006. The first reports of M230I in Egypt were at the beginning of the 2006/2007 season and found in human and avian isolates. The sequences from the Egyptian cases this season have not been released, but avian sequences from this season have M230I and V223I, the other receptor binding domain change in the Gharbiya cluster.

However, prior to the reports of M230I in clade 2.2, there were reports of sequences from Vietnam with M230I. These sequences were a sub-clade of the Fujian strain, clade 2.3.2. Clade 2.3.2 was also reported in at least one wild bird isolate from Hong Kong in 2007, which was selected as the vaccine target for clade 2.3.2. This sequence has not been released. However, phylogenetic analysis indicates that the sequence will be closely related to the two sequences from Japan, strongly suggesting that the sequence will also have M230I.

In the clade 2.2 isolates, M230I was appended onto different genetic backgrounds in Germany and Egypt. The more recent Egyptian isolates evolved from the isolates from the prior season. Similarly, M230I has been appended onto clade 2.1 genetic backgrounds in Indonesia, including a swine isolate. However, the sequences from Vietnam, Hong Kong, and Japan all map onto the same branch of the clade 2.3.2 phylogenetic tree, indicating the full gene migrated from Vietnam to Hong Kong to northern Japan. Thus, the tracing of M230I in this series defines movement via a migration route, just as routes of migration were defined by the spread of clade 2.2 through Europe, the Middle East, and Africa. These sequences define H5N1 migration that goes through intersecting distribution routes in Japan and South Korea. South Korea has also indicated clade 2.3.2 has been detected in the largest H5N1 outbreak reported to date in South Korea.

However, isolates from Japan which have a clade 2.3.2 HA sequence also have clade 2.3.4 sequences in the other gene segments. In NA these sequences are closely related to a human NA sequence from Guangdong, A/human/China/GD02/2006, as well as wild bird sequences from Hong Kong. Thus, the isolates in Japan are reassortants with clade 2.3.2 and 2.3.4 sequences. The presence of these reassortants in whooper swans migrating out of Japan and South Korea raise concerns that these Fujian sequences will spread to regions in Mongolia and Siberia where clade 2.2 sequences have been reported, as well as into North America via Alaska and the Aleutian Islands.

Thus, the tracing of M230I helps define a migration route that connects various countries in eastern Asia, from Indonesia to Japan. The clade 2.3.2 and 2.3.4 sequences define a subset within the East Asia flyway which connects Vietnam, Hong Kong, Japan, and South Korea which raises concerns that such sequences will significantly spread along these routes to expand the H5N1 geographic reach and genetic diversity.
 

JPD

Inactive
Indonesia declares bird flu alert in Jambi province

http://www.vnanet.vn/Home/EN/tabid/119/itemid/250531/Default.aspx

akarta (VNA) – Indonesia has declared the highest bird flu alert status in Rimbo Mulyo village in Jambi province after the sudden deaths of thousands of birds in the area over the past three days, said a local newspaper.

The alert means local people living close to the areas where the sudden deaths occurred are obliged to report to the local community health centre every hour, according to Jakarta post newspaper.

The local health centre has set up a special task force who will conduct door-to-door health checks in anticipation of the possible transfer of the bird flu virus to humans.

Indonesia’s first case of bird flu was discovered by 2003 and there have since been 108 human fatalities, making up half of the world’s death toll of the disease.-Enditem
 

JPD

Inactive
Curious Tamiflu Resistance in Florida

http://www.recombinomics.com/News/05210804/H274Y_Florida.html

Recombinomics Commentary 23:30
May 21, 2008

Lina's team tested more than 2,600 samples of flu viruses from patients in Europe and found baffling patterns of this resistance that appeared to have nothing to do with actual use of Tamiflu.

For instance in France, 54 percent of those tested in Paris carried the mutation that would give resistance to Tamiflu, compared to 29 percent in southeastern France. "Which makes absolutely no sense," Lina said.
Patients showed no difference in their symptoms if they were infected with resistant virus, he noted.
"It's difficult to understand. I have no idea why these viruses emerged," he said.

The above comments indicate that the influenza experts are still baffled by the sudden emergence of oseltamivir (Tamiflu) resistance in H1N1. Although H274Y was thought to develop with an associated fitness penalty, the rapid spread of the polymorphisms clear shows that there is no fitness penalty.

Some of the sequences have been made public, including a recent partial sequence from Hong Kong. It was virtually identical to isolates from England, Turkey, and multiple locations in the US, further confirming that the H1N1 with H274Y was fit.

However, in the US the change has appeared on multiple genetic backgrounds, indicating spread was also facilitated by independent events. The change first began to appear in public sequences from the 2006/2007 season. These initial isolated were the New Caledonia strain. However, this season the incidence increased markedly and the H274Y was on a Brisbane genetic background. The movement of H274Y from one genetic background to another can be accomplished by recombination, and the timing of the initial outbreaks raise concerns that they originated in H5N1, which has the identical change and has been reported in patients as well as wild birds.

In the US, the change also appeared in isolates from Hawaii, which mapped with other isolates from Hawaii and California. The detection of H274Y in a subset of isolates on this branch indicates these patients were infected more recently.

Similarly, one of the newly released sequences from Florida, A/Florida/02/2008, also had the change, and it mapped with other isolates from Florida which did not have the change, again signaling a recent independent event. However, these Florida isolates also share a polymorphism that is almost exclusively found in N1 from H5N1 (see list here) again signaling recombination between N1 in H1N1 and N1 in H5N1.

In addition to avian polymorphisms in human isolates, there have been human polymorphisms in avian isolates, as described in the PB2 gene in H5N1 isolates in Egypt, suggesting there may be significant interactions between these viruses. Last season Egypt reported a large number of mild cases in its central and southern regions. Only one in 17 confirmed cases was fatal and most patients did not develop pneumonia. Such cases could be far greater than the number confirmed, because mild cases would frequently resolve without hospitalization or testing.

Thus, these interactions could be significant, and could explain the sudden appearance of H274Y in H1N1 following prophylactic use if oseltamivir to control H5N1.
 

JPD

Inactive
Another H5N1 Cluster Denied in Indonesia

http://www.recombinomics.com/News/05210801/H5N1_Indonesia_Cluster_Denial_2.html

Recombinomics Commentary 12:36
May 21, 2008

According to Mahbud, last May 1 Rizki complained was sick. "His body was hot." Hands, fingertips and foot very blue, said the father. Fortune was carried to the Yakriza Clinic, Tanah Kusir. "His diagnosis typhus."

A legacy of Rizki, Istiqomah showed the similar sign. Appetite descended, the tip of the finger turned blue and breathless. Isti could be treated two nights in the Gandaria Hospital afterwards were given by reconciliation to the Persahabatan Hospital, Rawamangun. Love, medical help could not rescue the life of the girl.

Priyanti, the team's member of the control doctor of Persahabatan Hospital bird flu, said, Istiqomah positive was affected by bird flu. The girl suffered hot was accompanied by the cough and breathless. The "photograph toraks him also showed the sign" of "pneumonia," said Priyanti.

At this time RS Persahabatan was also treating Alamsyah, 26 years, the older brother Istiqomah.

"Gandaria still could not be classified as cluster bird flu because of his incident just had one case and casualties that was ascertained positive also only one person," Togi words.

The above translation describes another H5N1 cluster that has been denied in Indonesia due to a mis-diagnosis and a false negative. The index case died with bird flu symptoms, including cyanosis in extremities. However, he was diagnosed as having typhus and not considered a bird flu case. His sister had similar symptoms, including cyanosis in extremities, but she was lab confirmed as H5N1 positive. Recent reports indicate the H5N1 was confirmed by a second lab, so she is an official case. A third sibling was hospitalized with symptoms, but declared H5N1 negative.

The cluster was then declared as a non-cluster because only one of the three siblings was confirmed. This denial is the third in the last four confirmed cases in Indonesia. In the earlier cases, one cluster involved a relative who died with respiratory problems, while the index case for the other cluster was mis-diagnoses with dengue fever. The diagnosis of dengue fever was questioned in media reports, but a mis-diagnosis was denied. The denial was accepted without question in a Promed commentary.

These denials of clusters has extended an under reporting trend that is widespread, but the denial of three cluster out of the last four confirmed cases is an H5N1 record. In the 1918 pandemic the most frequent mis-diagnosis were dengue fever, typhoid, and cholera. Indonesia has previous mis-diagnosed patients with dengue fever and typhus previous, which were subsequently lab confirmed as H5N1. However, the specific denials of obvious clusters are new.

In addition to the cluster denials, confirmation of cases is also delayed. One case described in local media has not been confirmed, and there is a cluster of five family members with symptoms, but typhus has again been mentioned, even though birds in the neighborhood died suddenly.

The increase in cluster denials in Indonesia is a cause of increasing concern.
 

JPD

Inactive
Another Fatal H5N1 Case Denied in Indonesia

http://www.recombinomics.com/News/05210803/H5N1_Indonesia_H5_Denial.html

Recombinomics Commentary 12:36
May 21, 2008

Results of the Laboratorium Health Hall inspection (BLK) Dinkes (Health Service, ed) West Java on the sample of blood and the suspect's liquid suspect bird flu, late Tini Suhartini (54) from the Babakan Asem Village, Desa Ranjeng, Kecamatan Cisitu, Kabupaten Sumedang, was stated positive H5 bird flu of Avian Influenza-AI).

"Results, the sample" of the "patient's blood was positive H5, but not specific H5N1."

Positive H5, he said.

H5 that personally, said Hilman, meaning that influenza.
"The influenza his kind sorts."
Beginning with H5N1, H5N2, et cetera up to H5N15.
Whereas bird flu or AI personally the entry in the category H5N1.
However, for the case of the patient was expected by AI that died that, despite only was stated positive H5, we took the maximal risk of considering the patient was affected by AI, he said.

The above translations describe another lab confirmed fatal H5N1 case in Indonesia, with comments discounting the diagnosis. The only confirmed bird flu fatality reported to date that was not H5N1 was an H7N7 case in the Netherlands in 2003. The likelihood that the Indonesian patient died from another H5 serotype is remote, and largely irrelevant, since the patient has already died, indicating any other H5 infection would have a case fatality rate of 100%.

The above comments sound remarkably similar to the denials in South Korea, where a soldier culling H5N1 infected birds also tested positive for H5. He was positive on two or three independent tests leaving little doubt that he was H5N1 positive, but a failure to dedtect the N1 led to a “negative” report. The H5N1 was recently said to be 99.7% identical to the H5N1 in Japan, which had a clade 2.3.2 HA and 2.3.4 related sequences in the other seven gene segments. Moreover, the HA sequences in Japan had M230I, increasing the likelihood of human infections.

The above qualifications in Indonesia follow denials on three clusters linked to three H5N1 confirmed cases. These denials continue to cause concerns.
 

JPD

Inactive
Fujian H5N1 Re-emerges in South Korea

http://www.recombinomics.com/News/05220801/H5N1_Korea_Emerge.html

Recombinomics Commentary 00:33
May 22, 2008

A suspected bird flu case has been reported at a chicken farm in the central part of the country after over a week of no new outbreaks, the government said on Wednesday.

Quarantine officials in South Chungcheong Province said 60 chickens suddenly started dying on Monday at a farm in Nonsan, 213 kilometers south of Seoul.

It said a preliminary on-site test came up positive for the H5 avian influenza, but added that it may not be a virulent strain.

The above comments suggest that H5N1 has not been stamped out in South Korea even though more than 8 million birds have been culled. The comments continue to speculate on a low path H5 even though the chickens died suddenly and there have been no reports of low path H5 in South Korea. A new OIE report was just filed on more H5N1 outbreaks ( see satellite map) and the H5 in the above outbreak, like the H5 in the soldier, will be H5N1.

Korea has acknowledge the 99.7% identity between the H5N1 in Korea and the sequences released by Japan. The sequences from Japan were the Fujian strain (clade 2.3), with HA from one sub-clade (2.3.2) and the other seven gene segments form another sub-clade (2.3.4).

The re-emergence of H5N1 on farms in Japan raise concerns that Fujian H5N1 has now become endemic in Korea, which could act as a reservoir fro H5N1 spread into North America and Easter Siberia based on migration patterns if whooper swan, which were H5N1 confirmed in Japan and which migrate from Korea to Mongolia in the summer.
 

JPD

Inactive
Media Spin on Fujian H5N1 in South Korea

http://www.recombinomics.com/News/05220802/H5N1_Korea_Clade_Spin.html

Recombinomics Commentary 03:51
May 22, 2008

According to the environmental ministry, the animal hygienic laboratory (Ibaraki prefecture Tsukuba city) when the virus which is detected with the Akita prefecture Towadako and the virus which is detected in Korean all the 羅 north road gold embankment cities are compared, base arrangement of the gene agreed 99.7% or more.  The virus which is found at the total 3 place of Akita and Hokkaido understands that the result of gene analysis, it is identical.

The above translation provides more information on the H5N1 isolates from Japan and South Korea. In Japan, H5N1 was found in whooper swans at three distinct locations, Akita and two distinct sites on northeastern Hokkaido (see satellite map). Two sets of sequences from all eight gene segments have been made public and they are virtually identical. The above translation indicates they have an identity that is 99.7% or higher with sequences in South Korea.

The sequences from Japan were reassortants. The HA sequence was most closely related to clade 2.3.2 isolates from Vietnam in 2005 and most closely related to a wild bird from Hong Kong in 2007. The other seven gene segments are most closely related to clade 2.3.4 isolates, including sequences from a patient in Guangdong Province. The other most closely related 2.3.4 sequences are from wild bird isolates from Hong Kong collected in 2006.

The local media in Korea is trying to claim that the isolates there have never been reported to cause a human infection, based on the clade 2.3.2 relationship with HA. However, there is little scientific data to extend this observation to the isolates in Japan or South Korea because they are mixtures and most genes are related to clade 2.3.4, which is the sub-clade associated with human infections. Moreover, H5N1 is constantly evolving, so basing human infection potential on earlier isolates has little value.

The clade of most interest are clade 1, clade 2.1, clade 2.2, and clade 2.3 All four of these sub-clades have been associated with human infections. Further subdivisions of the sub-clades are based on phylogenetic analysis and most such analysis has not led to a loss of the ability to infect humans.

In 2004 there first human cases linked to clade 1 were in Vietnam and Thailand. Although these isolates were distinguishable, both sets of sequences cause fatal human infections.

In 2005 clade 2.1 was associated with fatal human infections in Indonesia. Most of the human cases fell into a further sub-clade with the HA cleavage site of RESRRKKR. However, the second confirmed case in Indonesia was in another sub-clade as was the Karo cluster, so dividing up the isolates did not limit human infections to one sub-clade, although most were had the novel cleavage site cited above.

The same was true for clade 2.2. One sub-clade was in Egypt, and was linked to 50 cases. However, this sub-clade could be divided into multiple smaller sub-clade, but they all were linked to human infections. Similarly, sub-clade 2.2.3 could be subdivided and have cause human cases in Azerbaijan and Pakistan.

Thus, even though these sub-clades can be further divided, most of these divisions produce human infections, so claims that clade 2.3.2 does not cause human infections has little scientific support, and the H5 positive soldier in South Korea is an example of a human clade 2.3.2 infection, if the classification is limited to the HA sequence.

Thus many sub-clades and further divisions of these sub-clades can cause human infections including the H5N1 in circulation in Japan and South Korea. This ability has been demonstrated in the soldier in South Korea who was H5 confirmed in multiple lab tests.
 

JPD

Inactive
Local Bird Flu Virus Matches Strain Found in Japan

http://english.chosun.com/w21data/html/news/200805/200805220022.html

Researchers have found that strains of bird flu found in Korea and Japan this year are almost genetically the same. The National Veterinary Research and Quarantine Service said Wednesday that the genetic makeup of a strain of bird flu sampled from chickens in Gimje, South Jeolla Province was 99.7 percent identical to a sample from swans found in Japan's Akita prefecture. The finding gives grounds to analysis that the latest outbreak of avian influenza may have originated from migratory birds.

Kim Jae-hong, a professor of veterinary medicine at Seoul National University, said that viruses over 99 percent genetically the same are considered the same strain. This substantiates assumptions that migratory birds spread the virus on their way north in March and April after spending the winter in Southeast Asia.

Korea saw its first case of bird flu this year at a chicken farm in Gimje on April 1. In Japan, four swans were found to be infected with bird flu on April 21. This is not the first time that the same strain of bird flu has broken out in Korea and Japan; similar findings were confirmed when bird flu was reported in the two nations in 2003 and 2006.
 
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