11/18-11/24/06 | Weekly Bird Flu Thread: World unprepared for bird flu pandemic

JPD

Inactive
World unprepared for bird flu pandemic, warns expert

http://www.telegraph.co.uk/news/main.jhtml?xml=/news/2006/11/18/wflu18.xml

By Roger Highfield, Science Editor
Last Updated: 1:29am GMT 18/11/2006

The world is unprepared for a bird-flu pandemic because it has not carried out enough research to create an effective vaccine, a leading specialist told The Daily Telegraph yesterday.

Eggs in a laboratory
Vaccines are made by growing viruses in hen eggs

For "at least one year" the global population would be vulnerable when the virus mutates into a super-flu that can spread among people, said Prof Albert Osterhaus, of Erasmus Medical Centre, Rotterdam, a world authority on viruses.

"No country is sufficiently prepared at the moment," he said yesterday.

Although progress has been made in producing a stockpile of anti-viral drugs — notably Tamiflu — that may delay the spread of a pandemic strain, Prof Osterhaus warned that research was needed on a vaccine, which would be the key line of defence.

The global capacity for vaccine production is of the order of hundreds of millions of shots a year, but billions of people would need a vaccine if a strain emerges.

A so-called "moderately severe" scenario for an influenza pandemic, used in one recent Government exercise, predicted 21 million UK cases in two waves of outbreaks.

In the first wave, the outbreak would peak in weeks six and seven, with more than four million cases in each of those weeks and more than 100,000 deaths each week.

Overall, the simulation assumed that more than a million people would be hospitalised and there would be about half a million deaths. The cost, in terms of impact on national wealth, would run to £45.7 billion, equivalent to a "short recession".

Prof Osterhaus, a member of the Royal Society/Academy of Medical Sciences Pandemic influenza working group, said there was also a particular need for an adjuvant, a chemical that boosts the effectiveness of a vaccine.

Trials on people have been limited and suggest that current vaccine formulations "are not going to do the job, even in terms of providing some protection", said Prof Osterhaus.

Vaccine manufacture relies on growing viruses in hen eggs, and there are worries that there is an insufficient supply of fertilized eggs. "A chicken classically lays one egg each day, so if you suddenly need 10 eggs it is not going to work," Prof Osterhaus said. His warning comes as scientists report that, by comparing H5N1 influenza viruses found in birds with those of the avian virus that has also infected people, they have identified key genetic changes required for a pandemic strain to emerge.

"This is a significant find," said Prof Osterhaus, saying it corroborated earlier work, including by his own team, that "the virus might mutate into a form that might spread from human to human".

The new work, reported in Nature, illustrates the genetic changes required for the H5N1 avian influenza virus to adapt to easily recognise proteins called receptors that are the gateway to human cells.
 

JPD

Inactive
Greece finds bird flu virus in wild duck

http://www.channelnewsasia.com/stories/afp_world/view/242046/1/.html

Posted: 18 November 2006 0323 hrs

ATHENS - Greece said Friday it had found bird flu in a wild duck shot by a hunter, adding that more tests were underway to establish whether the virus was the strain that can kill humans.

The H5 virus, most of whose sub-types are only lethal to birds, was confirmed in the migratory duck killed in a coastal area of the central prefecture of Fthiotida, the agriculture ministry said in a statement.

Samples from the bird will be sent to the EU Reference Laboratory for avian influenza in England to determine whether the virus is in fact H5N1, the highly pathogenic strain that has killed 152 people in the Far East, the Middle East and China since 2003.

The relevant European Union authorities have also been informed, the ministry said.

This is the first H5 case reported in Greece since the summer.

Earlier this year, the Greek authorities confirmed 33 cases of H5N1 between February and March, all in wild birds.

Yet even though no domestic poultry cases turned up, demand for chicken in the country took a serious blow for weeks.

Local authorities in Fthiotida have been advised to ban the transport of live poultry near the area where the duck was hunted.

Poultry owners have been warned to keep their flocks indoors, and the public advised to alert the authorities to all bird carcass finds, the ministry said.

- AFP /ls
 

JPD

Inactive
Inoculate kids first: bird-flu expert

http://www.canada.com/montrealgazet...=066615eb-7658-4ac0-841f-c8730ce1a17d&k=44056


CHARLIE FIDELMAN, Montreal Gazette
Published: Friday, November 17, 2006
Once the bird flu virus strikes, vaccinate children first, a leading epidemiologist suggested yesterday.

Children are excellent transmitters of infection, so it’s useful to protect them first, Danuta Skowronski of the British Columbia Centre for Disease Control told an immunology symposium held in Montreal.

Older people have some crossover immunity from previous flu outbreaks, Skowronski said. Of the 40 million people who died in the 1918 Spanish flu pandemic, most were under 40, she noted.

Ditto for victims of the current avian influenza virus, Skowronski said. Of the 153 cases of death reported to the World Health Organization, 94 per cent involved people younger than 40.

It’s crucial health officials reconsider their bird-flu priority strategy now because it will be next to impossible to switch tactics during an outbreak, she warned. “The idea of children first needs to be discussed as one alternative.”

Of the several influenza strains that routinely infect birds around the world, the deadly H5N1 has health officials deeply concerned that it will mutate, allowing it to jump easily from human to human. That hasn’t happened, but responsible governments are preparing contingency plans for the pandemic that experts say will hit, Skowronski said.

“What could we be doing to try to mitigate the impact?” she asked. “We’re more prepared today then we ever were yesterday or last year, but we will never be fully prepared.

“A new mutation can arise. We don’t know when that’s going to happen, but the possibility is there.”

The symposium was organized by Immunology Montreal a new scientific group founded by McGill University, INRS-Institut Armand-Frappier and the Université de Montréal.
 

JPD

Inactive
CDC seeks community input about flu pandemic

http://www.siouxcityjournal.com/art...nebraska/8e245568ef8314058625722a0013881c.txt

OMAHA, Neb. (AP) -- Nebraskans can have a say on national plans for a possible bird flu pandemic.

The federal Centers for Disease Control and Prevention are looking for 100 Nebraskans who would like to offer comment on the extreme measures under consideration. Those measures include closing schools, canceling public events and asking people to stay in their homes.

A forum will be held from 9 a.m. to 3 p.m. Saturday in Lincoln. People may sign up by contacting the Association of State and Territorial Health Officials at (800) 219-6670.

Health officials worldwide are concerned that avian flu will set off a pandemic.

So far, most human cases have been linked to close contact with sick birds or their droppings carrying the H5N1 strain. Experts fear the virus could mutate into a lethal form that spreads easily from person to person.

Nebraska is one of just four states that has been asked to hold a community forum. Events have already been held in Atlanta and Seattle. A forum in Syracuse, N.Y., is also planned for Saturday.

Nebraska is "a place with a proven record" in pandemic preparedness, said Roger Bernier, a senior adviser in the National Centers for Immunization and Respiratory Diseases at the CDC.

That, combined with the constructive feedback the CDC heard here about vaccination protocol, was why the state was chosen as the Midwest location for a forum, he said.
 

JPD

Inactive
H5N1 In Delaware

http://www.recombinomics.com/News/11180601/H5N1_Delaware.html

Recombinomics Commentary
November 18, 2006

The updated USDA table of detection of H5N1 in the United States identifies positive green winged teal in Sussex County, DE. Further testing is underway. However, the updated table included two more failures to isolate virus from H5N1 positive samples in New York, and raises serious questions about the methodology and resource allocation of the surveilance program.

The vast majority of the samples are from hunter killed birds, yet the only positive sample from hunter killed birds is from mute swans in MI. Detection of the Qinghai H5N1 strain in Europe was most frequent in mute swans. Similarly, a second positive sample was from environmental samples in MD, which is also the source of most H5N1 positives in the recent PNAS paper on the spread of the Fujian strain of H5N1 in China.

Live birds have yielded H5 virus (H5N1 and H5N3) in PA and MT, while all hunter killed ducks (green winged teal, mallard, northern pintail, northern shoveler) are either still being tested, or have failed H5 virus (H6N2 was isolated from an IL sample and the remaining samples were negative for virus).

The widespread detection of H5N1 in hunter killed ducks, raises questions about failures to detect H5N1 in other sources. The failure to isolate H5N1 from five locations, and the fact that the seven locations still being tested are also from hunter killed birds, raises questions about detection failures in live birds and environmental samples.

These failures in H5N1 positive birds, raise questions about repeated failures to detect H5 in dead birds, or even report H5 positive dead birds in Lakeport, CA.

The failure to isolate H5N1 from any source since August, in spite of widespread detection throughout the United States, raises serious questions about the surveillance program in the United States and Canada, which also has not announced H5N1 isoaltions for this year, and has only released one partial sequence from H5 isolated throughout Canada in 2005.

Moreover, the size of the PCR insert in the H5 detected in a dead farm goose on Prince Edward Island has been withheld, raising additional concerns about Qinghai H5N1 in North America, since the positive goose had H5N1 symptoms, and death was rapid for all four farm geese with H5N1 symptoms.

The H5 sequence contain valuable information about the acquistion of H5N1, swine, and human sequences. Sequence data from H5 in the United States and Canada should be released immediately.
 

JPD

Inactive
New bird flu cases discovered in Egypt

http://www.turkishpress.com/news.asp?id=151824

Published: 11/18/2006

Cairo - Four Egyptians were admitted to hospital Thursday in the southern governorate of Sohag on suspicion of contracting the bird flu virus, according to newspaper reports Friday.

The victims ranged between nine months and 18 years and were sent to the Sohag general hospital and the regional university hospital.

Blood samples were taken from the four and sent to be tested in the central labs of the ministry of health.
 

JPD

Inactive
Federal government asks Syracuse about pandemic flu

http://www.syracuse.com/news/updates/index.ssf?/mtlogs/syr_poststandard/archives/2006_11.html#206334

Closing schools, canceling large public gatherings, staying away from other people and working from home were some of the control measures discussed today at a public forum in Syracuse on pandemic influenza.

Syracuse was one of four places nationwide chosen by the federal government to listen to citizens’ points of view. The other sites were Atlanta, Seattle and Lincoln, Neb.

“This is one of the first times the federal government has come to the citizens to hear their views on when the pandemic influenza comes. We don’t say ‘if’ anymore, it’s ‘when,’ ” said Charlotte “Chuckie” Holstein, executive director of FOCUS Greater Syracuse, the organization responsible for organizing the event.

About 100 people attended the event. The results of the four gatherings will be translated into national guidelines for all municipalities in the United States.
 

JPD

Inactive
International Avian Flu Meeting To Be Held in Bamako, Mali

http://usinfo.state.gov/xarchives/d...=November&x=20061117171159lcnirellep0.3019983

By Cheryl Pellerin
USINFO Staff Writer

Washington -- Health and agriculture ministers from many countries around the world will gather in Bamako, Mali, December 6-8 to address issues of growing concern involving avian and pandemic influenza and international response and preparedness.

The African Union, the government of Mali and the European Union are co-organizing the conference, and the U.S. State Department is a co-sponsor.

The meeting will be the fourth since September 2005, when President Bush announced before the United Nations General Assembly a new International Partnership on Avian and Pandemic Influenza that would bring together key nations and international organizations to bolster global readiness ahead of the growing threat.

Members of the international partnership met in Washington in October 2005 and in Vienna, Austria, in June 2006, and donors from the global community met in Beijing in January 2006, pledging $1.9 billion to fight avian and pandemic influenza.

Of that total, the U.S. contribution has been $334 million. In September, the total U.S. contribution rose to $392 million.

"Avian influenza is expanding across the globe and remains a serious concern for all of us, including countries that are not yet affected, such as those in the Western Hemisphere," said Ambassador John Lange, special representative for avian and pandemic influenza at the State Department, at a press briefing November 16.

The United States is working with many other countries, Lange added, including African nations, "because avian influenza spread to Africa in 2006 and continues to be a concern."

PREPAREDNESS IN AFRICA

The 4th International Conference on Avian Influenza in Bamako aims to give new insights into avian influenza disease development worldwide and offer the latest information on strategies, vaccination and forms of compensation to citizens for poultry deaths. The assembled ministers also will work to foster integrated national strategies coordinated at regional and global levels.

"Given the urgency and the seriousness of the situation," said African Union Chairman Alpha Konaré of Mali in a statement on the conference Web site, "I therefore invite all our partners and stakeholders to leave no stone unturned in working towards our goal of minimizing HPAI [highly pathogenic avian influenza] impact in livestock and public health domains in Africa."

The United States is concerned about the possible decimation of the poultry population in Africa if bird flu spreads beyond the eight currently affected countries.

"If [avian influenza] continues to spread in Africa," Lange said, "then separate from the infections that take place in humans who are very close to the chickens, you may have a loss of a primary protein source [for human diets] in some countries."

For those interested in the economic and social development of Africa, he added, "that is a serious concern.”

The virus now is considered endemic, or prevalent, in poultry populations in large parts of Asia, according to the World Health Organization (WHO), and time frames for controlling the disease are being measured in years.

"We hope to avoid that in Africa," Lange said. "That's one of the reasons we're so excited about the event coming up in Bamako, to focus at the ministerial level, in African countries and other countries around the world, attention on avian and pandemic influenza" and on the importance of engaging in pandemic preparedness.

ENHANCING THE ASIA-PACIFIC REPONSE

The focus on preparedness is also intensifying in Asia.

The two-day 18th Asia-Pacific Economic Cooperation (APEC) Ministerial Meeting concluded November 16 in Vietnam with a joint statement by representatives from 21 member economies that included a section on enhancing avian and human pandemic influenza preparedness and response.

The ministers renewed their commitment to communicate outbreaks transparently and share samples for research to improve preparedness, and urged continued efforts to develop, integrate and practice avian and pandemic influenza preparedness plans to mitigate human suffering and major effects on commerce, trade and security.

APEC economic ministers also agreed to continue to collaborate with the International Partnership on Avian and Pandemic Influenza and to maintain cooperation with international organizations such as the WHO, the United Nations Food and Agriculture Organization and the World Organization for Animal Health.

"As one of the core principles of the International Partnership," Lange said, “we are stressing to country after country the importance of transparency and sample sharing in dealing with avian influenza."

The sooner the world knows about each outbreak, he added, "the more able we are to help a country try to control the outbreaks and to deal with what could someday be a pandemic.”

The next meeting of the international partnership will be held in New Delhi in 2007.

More information about the conference is available on an African Union Web site.

For more information on U.S. and international efforts to combat avian influenza, see Bird Flu (Avian Influenza).

(USINFO is produced by the Bureau of International Information Programs, U.S. Department of State. Web site: http://usinfo.state.gov)
 

JPD

Inactive
False Negatives for H5N1 Receptor Binding Domain Changes?

http://www.recombinomics.com/News/11180602/H5N1_RBD_Negatives.html

Recombinomics Commentary
November 18, 2006

A/Vietnam/30262III/04 and A/Vietnam/3028II/04 contained a heterogeneous mixture of HAs on sequence analysis, prompting us to plaque-purify the viruses in Madin–Darby canine kidney (MDCK) cells to obtain viral clones with distinct HA sequences

Moreover, two of these changes, lysine at position 182 and arginine at position 192, were present in the HAs of clade-2 H5N1 viruses isolated from two individuals in Azerbaijan and one individual in Iraq, but not in any of the more than 600 avian isolates examined.

The above comments, describing isolates that had several of the changes that increased receptor binding, suggest that false negatives may mask the prevalence of such changes in avian populations.

The receptor changes were identified by isolating the H5N1 on mammalian cells, which select for H5N1 with mammalian receptor specificity. It is known that growth of flu in chicken eggs can lead to the loss of mammalian specific sequences, which may account for the failure to detect these changes in avian isolates.

The history of S227N positive H5N1 isolates is instructive. S227N was first identified in two human H5N1 isolates, A/Hong Kong/212/03 and A/Hong Kong/213/03, from a father and son who had traveled to Fujian province in 2003. The H5N1 was isolated on MDCK mammalian cells, as described above for the human Vietnam isolates.

The increased affinity of these two isolates for mammalian receptors led to a warning in October, 2005 that donor sequences for the formation of S227N were present in H9N2 isolates in the Middle East. In January, 2006, the first confirmed human Qinghai case was announced, and the isolate, A/Turkey/12/2006, was positive for S227N. However, the isolate from his sister, A/Turkey/15/2006 was negative for S227N, although another human isolate from Turkey, A/Turkey/65596/2006, was also positive for S227N, while a fourth isolate, A/Turkey651242//2006 was also negative.

The data for the three clones from A/Vietnam/3028II/04 provide an explanation for the detection of S227N in two of the four isolates from Turkey. Even though the isolates from Vietnam were grown on mammalian MDCK cells, only clone 3 had S227N, as well as Q196R. Neither polymorphism was in clone 1 or clone 2, although both had position 138 polymorphisms (A138A and A138T, respectively). Clone 2 also had N248S. Thus, S227N was only found in one of three clones from the same patient, even though all isolates were obtained using the same mammalian cell line in the same lab.

This variation using MDCK cells raises the string possibility that other changes that increase affinity for mammalian receptors and decrease affinity for avian receptors. might be lost during isolation, especially if the isolation is in chicken eggs.

Difference were also seen in sequences from the patient in Thailand, A/Thailand/1-KAN-1/04. The original sequence had both G143R and N186K. However, that sequence was replaced with a sequence that had only G143R. G143R is present in H5N1 avian sequences. N186K is only in human isolates, including influenza B.

These data suggest that the failure to find some of the receptor binding domain changes in avian isolates, may be linked to the use of chicken eggs to isolate the virus. The receptor binding changes described in humans in Vietnam, Thailand, Hong Kong, Turkey, Egypt, Azerbaijan, and Iraq have not been described in human H5N1 from Indonesia, but Hong Kong and the CDC labs use chicken eggs to isolate the human H5N1 from Indonesia, which may select against the changes that increase affinity for mammalian receptors.

Isolation of both human and avian H5N1 on mammalian cells may be useful.
 

JPD

Inactive
States must reveal flu plans, say doctors

http://www.theaustralian.news.com.au/story/0,20867,20784314-1702,00.html

November 19, 2006
A COMMONWEALTH plan requiring hospitals and clinics to map their response to a bird flu pandemic can't be followed through until the states reveal their game plan, doctors have warned.

A new report released today sets out Australia's latest preparations for a possible outbreak of severe influenza, including vaccine development, infection control and the crucial role of doctors to help contain the spread.

In the 80-page federal government-sponsored document published by the Medical Journal of Australia, Chief Medical Officer John Horvath says the country is better prepared than ever to respond effectively to a pandemic, whether it is a human form of the deadly bird flu virus H5N1 or a new influenza strain.

In the event of either, hospitals and clinics will be on the front line so they must each have a strategy in place, Prof Horvath says.

"Every practice needs a plan that defines the role of staff, incorporates infection control and staff protection measures and considers business continuity," he writes.

"Most importantly, a practice needs to know how to implement that plan."

For example, each clinic could plan to set up "fever clinics" to treat the sick, and designate itself "influenza" or "non-influenza" to contain the disease.

"All clinics need to consider how they will manage patients with fever or respiratory symptoms," Prof Horvath warns.

But the Australian Medical Association (AMA) said doctors could not properly plan for an influenza pandemic until state governments alert them of their plans.

"General practitioners are keen to properly prepare for a flu pandemic but they're currently trying to do so in a vacuum of information on how jurisdictions propose to mobilise, integrate, finance and protect primary care," AMA president Mukesh Haikerwal said.

There appeared to be no consistency across states and territories on the role of fever clinics or how patients would be directed to the most appropriate care, Dr Haikerwal said.

"Governments must resolve these issues and, as a matter of urgency, deliver to GPs a clear and consistent pandemic primary care plan, so doctors can get on with completing their own plans," he said.

Australia has spent $600 million since 2003 preparing for a possible influenza outbreak, stockpiling antibiotics and medical equipment, and funding a vaccine which is in second-phase trials.

The vaccine protects against one strain of the deadly H5N1 virus, which has so far killed more than 200 people in Asia and is seen as the biggest current threat.

In the report, Prof Horvath said it was possible the world had already averted an H5N1 pandemic by extensive culling of poultry and isolation of infected humans.

"Yet all preparations may seem insufficient if the world comes face to face with a rapidly spreading novel (flu) virus like the one that emerged in 1918."
 

Bill P

Inactive
HHS Issues Pandemic Planning Update

On November 13, 2006, the U.S. Department of Health and Human Services (HHS) issued Pandemic Planning Update III,[1] an update of national and state pandemic activities. This document comes one year after HHS released its Pandemic Influenza Plan; the last pandemic update[1] from HHS was issued in July.[1]

According to the report, the $2.3 billion appropriated by Congress in June for the second year of the HHS Pandemic Influenza Plan will enable “HHS to continue to develop a vaccine for the US population within six months of the first sign of a pandemic, come closer to our goal of antiviral coverage of 25% of the population, and enhance domestic and international public health infrastructure preparedness.”[1] The President’s FY 2007 budget request also includes $352 million for agencies to build on the implementation of the Pandemic Influenza Preparedness Plan.”[1]

In June 2006, Congress appropriated $250 million for state and local preparedness. HHS has worked with states to facilitate their pandemic planning activities in the following ways:

In August, HHS “released an additional $225 million to the states to enhance preparedness, further regional planning and hold planning exercises” a portion of which, will be “awarded on a competitive basis for innovative approaches to preparedness.”

HHS allocated $170 million to subsidize state purchases of antiviral medications, with the goal of creating state stockpiles totaling 31 million courses of antivirals (HHS pays 25% of cost to states). To date, 33 states “have already placed orders”; 4 states “plan to make unsubsidized purchases above their allocation”; and “four states do not plan to take full advantage of the subsidy program”. To date, states have ordered more than 8 million courses. HHS requires that states reserve subsidized stockpiles for pandemic use; they may not be used to treat seasonal flu.

HHS joined with the Healthcare Distribution Management Association (HDMA) to develop a model distribution plan for intrastate distribution of antivirals. The plan was completed in August and “HDMA is now working with states to help them adapt the plan to their specific situations.”[1]

HHS has also purchased antiviral medications and equipment for the Strategic National Stockpile, including:

16 million courses of antivirals. Specifically, a total of $782 million was allocated this year for the purchase. By March 2007, HHS expects to have stockpiled a total of 36 million courses. HHS’s goal is to have “26 million courses of antivirals on hand by the end of 2006 and a total of 50 million courses in the SNS by the end of 2008.”

73.1 million N95 respirators; an additional 31.8 million are “on order”

37.4 million surgical masks; an additional 14.1 million are “on order”

“Face shields, gloves and gowns”

Additionally, HHS has allocated $25 million for stockpiling ventilators; however, studies are underway to determine what type of ventilators should be stockpiled for a pandemic influenza event. HHS anticipates that it will be able to procure ventilators in 2007-2008.[1]

According to the document, vaccine research “continues at a frantic pace”:

Vaccines have been developed for use against the “two known clades of H5N1.”
Under the assumption that pre-pandemic vaccine will provide “at least partial protection against new virus strains”, HHS has stockpiled enough vaccine developed from the H5N1 clade 1 virus to treat “more than some 3 million people.”

To develop additional vaccines using advanced cell-based technologies, HHS “committed over $1 billion during 2005 and 2006.”

To expand egg-based vaccine production capacity, HHS solicited proposals in July 2006 “to adapt existing egg-based manufacturing facilities for emergency production of pandemic influenza vaccine;” HHS expects to award these contracts in December.

Encouraged by clinical study results from GlaxoSmithKline and Novartis demonstrating that adjuvanted influenza vaccines may provide adequate protection with lower quantities of antigen, HHS is “reviewing contract proposals for further development of such dose-sparing technologies.”[1]

According to a CIDRAP news report,[2] the 3 million-person quantity of pre-pandemic vaccines that HHS says it has stockpiled represents a decrease from quantities outlined in a July update issued by the Department.[2] The July report indicated that HHS had enough vaccine for 4 million individuals. An HHS spokesperson told CIDRAP that this discrepancy is due mainly to a loss of potency of some of the stockpiled vaccines; however, a small percentage of the stockpiled vaccines have also been used for research.

- Jennifer Nuzzo

References

U.S. Department of Health and Human Services (HHS). Pandemic Planning Update III. November 13, 2006. Available at: http://www.pandemicflu.gov/plan/pdf/panflureport3.pdf. Accessed November 17, 2006.
Roos R. HHS says stockpiled H5N1 vaccine is losing potency. CIDRAP News. November 16, 2006. Available at: http://www.cidrap.umn.edu/cidrap/content/influenza/panflu/news/nov1606potency.html. Accessed November 17, 2006.
 

Bill P

Inactive
U.S. Partners with Mexico, ASEAN to Fight Flu and Other Emerging Infectious Diseases

On November 14, 2006, the U.S. Department of Health and Human Services (HHS) announced[1] the signing of a joint U.S.-Mexico agreement on pandemic flu cooperation.[1] The agreement was signed during the 14th meeting of the US-Mexico Border Health Commission, and is a “joint declaration to strengthen the commitment” of both nations to the coordination of “preparedness efforts, domestic and international disease surveillance activities, and response planning” for a pandemic.[1]

The Border Health Commission was established in July 2000 for the purpose of addressing the many unique public health and medical issues faced by U.S.-Mexico border populations.[1]

In related news, on November 17, 2006, the U.S. Department of State issued a press statement[2] announcing increased U.S. cooperation with and support for the Association of Southeast Asian Nations (ASEAN).[2] ASEAN is an association of 10 nations committed to 1)accelerating economic growth, and social and cultural development in the region, and 2)promoting regional peace and stability.[3] The newly strengthened U.S. partnership with ASEAN will focus on a number of priorities such as political stability, security, economic strength and cooperation, health, and disaster management.[2]

The health program will seek specifically “to improve ASEAN's capacity to combat emerging infectious diseases,” and will focus first on highly pathogenic avian influenza, and HIV/AIDS.[2]

- Crystal Franco

References

U.S. and Mexico pledge increased cooperation in pandemic influenza preparedness along border. HHS News Release November 14, 2006. Available at: http://www.hhs.gov/news/press/2006pres/20061114.html. Accessed November 17, 2006.
The ASEAN-U.S. enhanced partnership. U.S. Department of State Press Statement November 17, 2006. Available at: http://www.state.gov/r/pa/prs/ps/2006/76231.htm. Accessed November 17, 2006.
Association of the Southeast Asian Nations. Overview Updated February 16, 2000. Available at: http://www.aseansec.org/64.htm. Accessed November 17, 2006.
 

JPD

Inactive
Russia

Big laboratory for diagnosing bird flu opens outside Novosibirsk

http://www.itar-tass.com/eng/level2.html?NewsID=11000318&PageNum=0

20.11.2006, 13.21

BERDSK, November 20 (Itar-Tass) - One of the biggest in the world laboratories for diagnosing bird flu has opened at the Vektor state scientific centre of virology and biotechnologies outside Novosibirsk, Russia’s chief sanitary doctor reported on Monday.

The specialist, Gennady Onishchenko, takes part in the first international conference of CIS specialists in fight against bird flu.

According to him, “the laboratory was set up in accordance with a program of the World Health Organization”. A total of 1.2 billion roubles will be earmarked within the next three years to equip it with all necessary things, including diagnostic equipment. This year Russia will allocate 245 million roubles, he said.

Specialists from Vektor will test for bird flu biological samples supplied from Russian regions, Eastern Europe and Central Asia. So far, such research centres have been opened only in Great Britain, Australia, the United States and Japan.

Onishchenko said Russia is holding negotiations with China to make bird flu identification tests for that country as well. “We have 7,000 kilometres of common border with China,” the Russian specialist noted.

Up to 50 specialists from former Soviet republics are to study new methods of diagnostics at the laboratory every year. Vektor also participates in the development of Russian vaccine against bird flu.

A two-day international seminar-conference opened in Berdsk on Monday.
 

JPD

Inactive
Bush says he's keeping bird flu a top priority as he visits lab in Vietnam

http://www.cbc.ca/cp/health/061120/x112002A.html

Published: Monday, November 20, 2006 | 3:56 AM ET
Canadian Press: MARGIE MASON

HO CHI MINH CITY, Vietnam (AP) - U.S. President George W. Bush toured a bird flu lab Monday and praised Vietnam for its successful battle against the disease, pledging U.S. support and urging Southeast Asia to prepare for a potential pandemic.

Bush arrived at the Pasteur Institute - one of Vietnam's top research institutes for communicable diseases - in southern Ho Chi Minh City to an enthusiastic reception from crowds gathered on the streets.

Curious onlookers cheered and waved to him as his motorcade arrived. Vietnamese flags festooned shops and lamp posts and even a few people held up photos of the president.

It is Bush's first trip to the communist country, which hosted leaders from the 21-member Asia-Pacific Economic Co-operation forum over the weekend in the northern capital, Hanoi.

Bush congratulated health officials on Vietnam's effort to combat bird flu, which earlier killed 42 people in Vietnam, but has not claimed any victims during the past 12 months and has not detected any poultry outbreaks this year.

Vietnam's success is largely credited to a nationwide poultry vaccination campaign and strong political will to root out the virus. Some 100,000 people across the country have been deployed to vaccinate poultry against the disease, and about 45 million birds have been destroyed since late 2003.

Vietnam is serving as a model of how people ought to react," Bush said, vowing to continue supporting the country's fight against bird flu and HIV/AIDS.

Some 153 people have died of bird flu since it began ravaging Asian poultry in late 2003. In Indonesia, Bush's next stop on his Asian tour, it has killed 56 people, the highest toll in one country.

"The visit was very short, but it was a very significant one because the U.S. government, Vietnamese government, and governments worldwide are very interested in HIV/AIDS and avian influenza control," said institute director Nguyen Thi Kim Tien.

During his trip, Bush has praised co-operation among Southeast Asian nations and the United States on fighting bird flu, but has emphasized that the region must not relax its efforts to prevent future outbreaks and prepare for a pandemic.

So far, the H5N1 virus remains hard for people to catch. Most human cases have been traced to contact with infected birds, but experts fear it could mutate into a form that is easily spread among people, potentially igniting a pandemic.

On Sunday, Pacific Rim leaders endorsed an APEC action plan on fighting bird flu and pandemic preparedness, according to a final statement.
 

JPD

Inactive
Experts call for better flu plans

http://news.bbc.co.uk/1/hi/health/6158310.stm

Leading scientists say the UK government is failing to take advantage of scientific developments in the fight to prevent a flu pandemic.

A report from the Royal Society and the Academy of Medical Sciences says it is inadequate to stockpile just one anti-viral drug.

It warns the H5N1 virus can develop resistance to Tamiflu, and says the drug Relenza should also be stockpiled.

It also calls for special scientific advisor to help plan for pandemic flu.


We are concerned that it is not updating its plans as the landscape of what we know about influenza changes

It also said the expert should work alongside the Chief Medical Officer and the Chief Scientific Adviser, to advise ministers.

And it calls on the government to work more with industry on vaccine production.

Sir John Skehel, chair of the report's working group, said: "We are concerned that decisions are being made, as the UK prepares for a possible pandemic, that fail to take account of expert advice.

"For example, the decision to continue to stockpile just one antiviral drug is a major concern. This needs to be reconsidered.

"New evidence that H5N1 can develop resistance to Tamiflu indicates that a combination of antivirals should be stockpiled by the UK for the most effective management of a pandemic."

He said the government was right to order Tamiflu in early 2005 - a stockpile of 14.6 million courses of anti-viral drugs is being built up

But Sir John added: "We are concerned that it is not updating its plans as the landscape of what we know about influenza changes."

The RSM said the government should consider increasing the size of the stockpile and should think about using the drug as a prophylaxis, a preventative treatment.

'Most prepared'

The report calls on the Department of Health to bring together academic researchers and pharmaceutical companies to develop vaccines which could be used to protect the public in the event of a pandemic.

It says it would not be possible to manufacture enough influenza vaccines globally in a pandemic - because experts will not know the make-up of a pandemic virus until it starts to spread meaning it would not be possible to immunise everyone.

However, the report adds that limited vaccine supplies can "go-further" if they are combined with adjuvants - agents which boost the effectiveness of a vaccine.

Sir John said: "We find limited evidence that the UK government is engaging with industry to research and develop new vaccines.

"Encouraging researchers and drug manufacturers to share information would speed up the development of adjuvants and vaccines to make the UK more responsive during a pandemic."

He added: "The UK is recognised as one of the most prepared countries in the world however research in this area must continue and up-to-date scientific information should be central to the government's decision making process.

"It will ensure we are prepared not only for a possible influenza pandemic, but also for any future emerging infectious diseases which may affect the UK."

Shadow health secretary Andrew Lansley said further action was needed.

"If you believe, as I do, that there's a major risk of a pandemic flu on the scale of the 1918 pandemic of Spanish flu, we should think about stockpiling more antiviral drugs, stockpiling face-masks.

"And we should think about getting an H5N1 vaccine now, on the basis it will offer limited protection.
 

JPD

Inactive
SUDAN: Moves to contain suspected avian flu in Juba

http://www.irinnews.org/report.asp?ReportID=56437&SelectRegion=East_Africa&SelectCountry=SUDAN

[This report does not necessarily reflect the views of the United Nations]

KAMPALA, 20 Nov 2006 (IRIN) - Thousands of domestic poultry have been destroyed in and around the southern Sudanese capital of Juba in an attempt to contain an avian flu threat reported in the region several months ago, officials said.

Samson Kwaje, the southern Sudan information minister, said a team had been visiting homes to check poultry and destroy suspected cases. The team would also determine how the affected farmers should be compensated.

"A surveillance team has been visiting homes where there are reports of strange poultry deaths," Kwaje said on Friday. "When they go there they destroy the birds, then government compensates the affected farmers."

However, he added, southern Sudan did not have big poultry farms. The team, including health officials, was concentrating on small subsistence farmers who own a few dozens of birds.

"This might have been a blessing in disguise, because the loss has not been that great. We have been assessing the situation of individual farmers and destroying the birds there if the situation is suspicious, so the impact economically has not been that pronounced," Kwaje added.

Authorities in southern Sudan announced in September that they had found the H5N1 strain in chicken and in the owner of an affected farm. The farmer was hospitalised with avian flu symptoms and later tested positive, prompting the World Health Organization to send a team into the impoverished country.

Neighbouring Uganda responded by restricting movements of bird and poultry products along the border with Sudan. It also asked its district officials to be on alert for suspected cases of the disease.

Health ministry spokesman Paul Kaggwa said a national task force was maintaining a high state of vigilance. At the same time, he added, Uganda had embarked on a community education programme, encouraging the general population to be vigilant as well.

"The task force on avian flu meets frequently to assess the situation. We have embarked on a programme to reach out to the communities disseminating information about the disease and how we can control its spread if it were to strike," Kaggwa said, adding that the health ministry was using a film van to reach out to the community.

The ministry, he added, had also trained medical personnel to handle the situation if the disease was detected in the east African country. The Uganda Wildlife Authority was also observing the movement of birds from the north and taking samples.

Uganda and southern Sudan are situated on a major migratory route of birds moving to southern Africa from Europe and West Africa. There was also cause for concern as traffic between Uganda and southern Sudan has increased in the recent past as many businessmen travel on the route.
 

JPD

Inactive
Human H5N1 in Sudan?

http://www.recombinomics.com/News/11200602/H5N1_Sudan_Human.html

Recombinomics Commentary
November 20, 2006

Authorities in southern Sudan announced in September that they had found the H5N1 strain in chicken and in the owner of an affected farm. The farmer was hospitalised with avian flu symptoms and later tested positive, prompting the World Health Organization to send a team into the impoverished country.

The above comments indicate H5N1 bird flu has been detected in a farmer in southern Sudan. WHO issued a report on the H5N1 outbreaks in poultry in Sudan. The report indicated that all human tests were negative, include a 50F who was hospitalized. However, there was no indication that the 50F was a farmer, so the relationship between the two hospitalized patients remain unclear.

The Sudan and Egypt had H5N1 outbreaks in poultry in February and sequences have been released. Although all sequences were the Qinghai strain, the Egyptian sequences were similar to the H5N1 from a patient in Djibouti as well as patients in Egypt. There were non re[ported human cases in Sudan, but the H5N1 in poultry had a novel HA cleavage site and was readily distinguished from isolates in neighboring Egypt and Djibouti.

Recently, additional outbreaks were reported in Egypt and southern Sudan. The Egyptian outbreak was associated with a confirmed fatal case as well as additional suspect cases, including three siblings and a neighbor who were hospitalized last week.

The sequence from the recent confirmed case in Egypt and it contained a novel change at position 230, involving an M-->I change (M230I). This change created a match with all three human seasonal strains, H1N1, H3N2, and influenza B. The influenza B match covered positions 226-230 (QSGRI). This region encompasses the receptor binding domain, and raises concerns over an increase in human-to-human transmission.

The recent Nature report also described additional changes (N186K and Q196R) which were also reported to be present in human H5N1 isolates from Azerbaijan and Iraq, from earlier outbreaks, Moreover, another human H5N1 isolate from Iraq has N186S. N186K also matches influenza B, while N186S matches early human H3N2 isolates. These additional matches raise concern, because such these changes may synergize. S227N has also been detected in Turkey and Egypt and these changes may be in a subset of H5N1 in an individual patients, and detection of these changes can be impacted by isolation procedures, especially if isolation uses chicken eggs as the isolation medium.

More information on the patient in Sudan would be useful.
 

JPD

Inactive
United States Pledges Increase in H5N1 Support in Indonesia

http://www.recombinomics.com/News/11200601/H5N1_Indo_Pledge.html

Recombinomics Commentary
November 20, 2006

The two Presidents discussed the grave threat posed by Avian Influenza (AI), and President Yudhoyono reiterated his Government's firm commitment to combating its spread. He briefed President Bush on Indonesia's completion of a unified national response plan, increase in the AI budget for 2007, and active participation in the International Partnership on Avian and Pandemic Influenza. President Bush announced the United States would increase its AI assistance to Indonesia to expand animal surveillance and response efforts and strengthen nation-wide public awareness. President Bush confirmed that the U.S. Centers for Disease Control and Prevention and Animal and Plant Health Inspection Service would assign permanent staff to Indonesia to build more effective partnerships with their counterparts in Indonesia. President Yudhoyono thanked President Bush for the United States' work in support of the Indonesian Ministry of Health's efforts to identify human AI cases and investigate AI outbreaks. The two Presidents stressed the imperative of continued and enhanced cooperation between Indonesian and American health workers and medical scientists to fight infectious diseases, including through the Naval Medical Research Unit (NAMRU-2), which has been in operation since 1968. They agreed that negotiations to extend the research work of NAMRU-2 should be expedited.

The above comments reaffirm the concerns about H5N1 bird flu in Indonesia and pledge additional support and expanded testing. However, after more than a year of analysis of H5N1 human patients in Indonesia, major questions on the origin and spread of human H5N1 remain.

The first human H5N1 was isolated in July of 2005 and had a novel cleavage site, RESRRKKR, as well as a number of associated genetic changes. From July 2005 to the present, the vast majority of human H5N1 has had these sequences. There have only been two exceptions, the second confirmed human H5N1 Indonesian case, and the Karo clusters. Isolates from the remaining cases have come from areas throughout Java, but primarily in regions of western Java, including the Jakarta area.

These human H5N1 sequences have failed to match poultry H5N1. The match failure was noted in the H5N1 meeting in Jakarta in July, 2006. Since the failure might have been due to collection dates, 91 samples were sent to a WHO-affiliated lab in Australia. The vast majority of the poultry isolates, collected between the fall of 2005 and spring of 2006 also failed to match the human sequences. On isolate on the island of Java from a duck in Indramayu had the novel cleavage site, but only matched a small subset of human cases from late 2005. They only two avian matches for the human cases on Java were from two chickens on Sumatra. The only non-human match on Java for the cases there was from a cat in Indramayu, which matched the human cases on Java, including the cases from Indramayu.

The match failures in poultry suggest H5N1 is evolving in a separate reservoir, which likely involves wild birds and a mammalian reservoir on Java.

Recent data has pointed toward the acquisition of mammalian polymorphisms that affect receptor binding. Although these changes have been found in H5N1 in human cases in Vietnam and Thailand, as well as human cases in the Middle East, they have not been found in human isolates from Indonesia. However, human samples from H5N1 patients have been sent to the CDC and Hong Kong, but the human H5N1 has been isolated in chicken eggs, which would select against mammalian specific changes in the receptor binding domain.

Determining the source of human H5N1 in Indonesia as well as the isolation of human H5N1 on mammalian cells, should be top priorities of the increased effort described above.
 

JPD

Inactive
GlaxoSmithKline Gets $40M HHS Contract

http://news.moneycentral.msn.com/provider/providerarticle.aspx?feed=AP&Date=20061120&ID=6213206

PHILADELPHIA (AP) - Drug developer GlaxoSmithKline PLC on Monday said it received a $40 million contract from the Department of Health and Human Services to supply pre-pandemic bird flu vaccines to the U.S. strategic national stockpile.

The company said the initial contract is for bulk H5N1 antigen, the substance in the vaccines that will help produce an immune response.

Under the terms of the deal, GlaxoSmithKline will manufacture and store the antigen at its production facilities in North America.

Shares of GlaxoSmithKline dipped 12 cents to $51.88 in afternoon trading on the New York Stock Exchange.
 

JPD

Inactive
Sanofi-Aventis wins 118 mln usd order
from US govt for new bird flu vaccine

http://www.hemscott.com/news/latest-news/item.do?newsId=37230924631178

PARIS (AFX) - Sanofi-Aventis said its Sanofi Pasteur unit has won an order from the US Department of Health and Human Services (HHS) to supply a new variant of its vaccine for the H5N1 bird flu virus.

The contract is worth up to 117.9 mln usd, depending on the number of doses that will be made from the concentrated form of the vaccine, which is currently in production.

Sanofi had already won a 150 mln eur order to develop and store a H5N1 vaccine for the US government last year.

This new contract covers a similar version of the H5N1 virus, known as clade 2, which circulated in birds in China and Indonesia in 2003-2004, and spread to the Middle East, Europe and Africa in 2005-2006, Sanofi said.

The World Health Organization has expressed fears of a bird flu pandemic in humans, prompting many countries to begin stockpiling potential vaccines. paris@afxnews.com js/rar
 

JPD

Inactive
New bird flu infection in poultry reported in northern Egypt

http://english.people.com.cn/200611/21/eng20061121_323591.html

Some household poultry in the northern Egyptian city of Alexandria have been tested positive for the H5N1 virus, a government statement said Monday.

The Egyptian Ministry of Health sent teams to cull the infected domestic fowls along with veterinary services and Alexandria police, Egypt's official news agency MENA quoted the Health ministry statement as saying.

The medical tests of people who have been in direct contact with the infected poultry are ongoing in the Egyptian Ministry of Health, the statement added.

It also said that there were two suspected human bird flu cases from Cairo and Giza, west of Cairo, admitted to hospitals but tested negative.

Earlier in November, bird flu cases in poultry were reported in the northern Egyptian governorate of al-Menofiya and the southern city of Luxor.

Egypt found the first bird flu case in dead poultry on Feb. 17, and then the virus spread to 20 of the country's 26 governorates. So far seven people have died of the fatal virus in the country.

Source: Xinhua
 

JPD

Inactive
Who dies, who doesn't: docs decide flu pandemic treatment guidelines

http://www.cbc.ca/health/story/2006/11/20/pandemic-triage.html

Last Updated: Monday, November 20, 2006 | 6:08 PM ET
The Canadian Press

A team of critical care doctors has come up with a tool their colleagues would hope never to have to use: a guide on how to make the life-and-death decisions about who not to treat during a flu pandemic.

The triage protocol, as it is called, suggests a scoring system that would see treatment withheld from people with the least chance of surviving in favour of helping those deemed to be more likely to pull through if they get care.

The protocol, published Monday in the Canadian Medical Association Journal, doesn't suggest scoring the elderly more harshly based on age alone. But the authors admit advanced age could be a count against care in a future version of their decision tool.

"We received strong and consistent feedback from both expert and stakeholder consultations that an age criterion should be included," they wrote.

"This remains one of the areas requiring further research and community input."

It is expected a severe flu pandemic would swamp health-care systems worldwide, putting workers in a situation where they essentially have to play God by deciding to withhold treatment they would give in normal times with normal caseloads.

The article outlining the protocol points out that during a pandemic the demand for intensive care beds in hospitals could surge to 171 per cent of existing capacity for influenza cases alone — which would be in addition to the car crash victims, heart attack patients and others who normally occupy those beds.

The authors hope their protocol will be put out for public discussion by some level of government. While it was written at the behest of the Ontario government, they think it could serve as a model for other parts of Canada and other countries as well.
 

JPD

Inactive
A sad day for Reykjavík Farm Animal Zoo

http://www.icelandreview.com/icelandreview/daily_news/?cat_id=16567&ew_0_a_id=246250

Almost all poultry was killed in Reykjavík Farm Animal Zoo yesterday on the orders of the Agricultural Authority of Iceland out of fear for bird flu.

Halldór Runólfsson, head vet of the Agricultural Authority, told RÚV that these measures had been necessary because some of the Zoo’s birds had been diagnosed with the H5N2 and H5N9 branches of bird flu.

Close to 60 birds of seven different species were killed yesterday: Geese, ducks, pheasants, Icelandic hens, several kinds of doves and a golden plover.

The lives of three birds were spared, of two hawks and the wild eagle Sigurörn, who has been in the Zoo’s care since last summer. He will be released soon.

The cages where the infected birds were kept are being sterilized and can be used again after three months.

The type of bird flu found in the Farm Animal Zoo is not dangerous to humans.
 

JPD

Inactive
RP to send birdflu task force to Indonesia

http://www.pia.gov.ph/?m=12&fi=p061122.htm&no=12&r=&y=&mo=

by Lovely Laudette D. Gamba

BUTUAN CITY (November 22) -- President Gloria Macapagal Arroyo will send 60 members of the National Avian Influenza Task Force (NAITF) to Indonesia to study the AI eradication and preventive measures of the country. This is to better prepare the Philippines on a possible AI outbreak.

The move came after the President's meeting with Indonesian officials and pronouncement of Indonesia as having the highest AI mortality rate. Indonesia has 75 percent case fatality rate. Among the 74 AI human cases in the country, 56 has resulted to death.

This is revealed by Dr. Samuel Animas, Animal Health Division Chief of the Bureau of Animal Industry (BAI), during the two-day Speakers Bureau Training on Avian Pandemic Influenza Preparedness and Response at the DA Conference Hall, recently.

The two-day speakers bureau training aims to equip the Information, Education and Communication (IEC) team of the Regional Avian Influenza Task Force (RAITF) with technical know- how on how to effectively disseminate and conduct information campaign on AI or bird flu.

Among the topics discussed during the two-day seminar is the Philippine Avian Influenza Protection Program, Basic Facts on Avian and Pandemic Influenza, Principles of Surveillance in Human and Animal Avian, Entry-Exit Management of Ports of Entry and Frequently Asked Questions on Avian.

Also discussed during the seminar is the Hospital Preparedness, Laboratory Diagnosis of Human and Animal Avian Influenza, Specimen Transport, Risk Communication and Dealing with the Media.

A workshop on risk communication regarding the different stages of Avian preparedness was conducted by the participants. The workshop aims to prepare participants on how to react accordingly in case of an AI outbreak in the country.
 

JPD

Inactive
H5N1 Isolated in Illinois and Michigan

http://www.recombinomics.com/News/11210601/H5N1_IL_MI.html

Recombinomics Commentary
November 21, 2006

The updated table of H5N1 positive samples in the United States indicates H5N1 has been isolated in from mallard duck samples collected October 19, 2006 in St Claire, MI and October 21, 2006 in Grundy, IL. This positives data is in marked contrast to the multiple isolates failures a week later in Grundy or failures four days earlier in Tuscola, MI.

The updated table indicates all positives since September 24 have been in hunter killed birds and most isolation attempts have failed. These failures raise question about the reliance on hunter killed birds and the failure to detect any H5N1 (low or high path) in dead or dying birds.

Isolation failures are likely to be linked to collection/transport/and testing procedures, and not be due to "dead" H5N1 at the time of collection, as had been indicated in earlier press releases..

Moreover, the failure to detect H5N1 in any dead or dying birds appears to be related to a lack of testing. The breakdown of samples tested shows that almost 35,000 live or hunter killed birds have been tested, but the number of dead or dying birds is less than 1000.

The failure to detect Qinghai H5N1 in live or hunter killed birds is not unexpected. Such detection has been rare and largely confined to areas of widespread infections in poultry, such as southern Siberia. Most countries in Europe did not find H5N1 until the beginning of this year, months after Qinghai H5N1 had migrated into the area. Moreover, the detection was in dead wild birds, not live or hunter killed birds.

In the United States there have been massive die-offs of waterfowl, which have largely been attributed to avian botulism. However, these die-offs have been in locations, such as the Great Lakes region, where multiple samples from live or hunter killed birds have tested positive for low path H5N1.

The failure to detect low path H5N1 in dead birds clearly demonstrates the limitations of a program that tests fewer than 1000 birds throughout the Continental United States, Alaska, and Hawaii.

The focus on birds that are unlikely to be H5N1 positive, and the very limited testing of dead and dying birds is cause for concern. This represents a fundamental failure to interpret the data generated in Europe and Africa, where H5N1 has been detected in poultry and fatal human infections, but detection of H5N1 in live or hunter killed wild birds has been extremely rare.

In Africa, media reports indicated over 15,000 wild birds were tested, and all were negative for H5N1, yet Qinghai H5N1 has been isolated and sequenced from birds and/or people from Egypt, Djibouti, Sudan, Nigeria, Niger, and Ivory Coast. Similarly, the vast majority of countries in Europe have only found H5N1 in dead wild birds or poultry.

On Prince Edward Island, only one of the four dead farm geese was tested, even though all four geese had symptoms of Qinghai H5N1 infection, including sudden death. H5 was confirmed by PCR, but the size of the insert was withheld.

The failure to test significant numbers of dead or dying wild birds in the United Sates and Canada remains a cause for concern.
 

JPD

Inactive
No M230I In Avian H5N1 Sequence In Egypt

http://www.recombinomics.com/News/11210603/H5N1_M230I_No.html

Recombinomics Commentary
November 21, 2006

A new chicken HA H5N1 bird flu sequence from Egypt, A/chicken/Egypt/10845/NAMRU3/2006 has been released at GenBank. The sequence has the common Qinghai cleavage site, REGRRKKR, and several additional polymorphisms that are specific to Egyptian isolates, or present in most Egyptian isolates. The sequence matches bird isolates from the outbreak in February, and therefore may represent H5N1 that has become resident in Egypt.

Edit - additional information: The submission date and title for this chicken isolate match the recent teal isolates from Egypt, suggesting this isolate is from the H5N1 outbreak in Egypt in February.

The sequence did not have M230I, which was present in H5N1 isolated from the most recent confirmed case in Egypt. M230I was cause for concern because it is present in all three human seasonal flu strains (H1N1, H3N2, influenza B) and creates a region of identity with influenza B at positions 226-230 (QSGRI) withing the receptor binding domain of influenza B.

Recently a suspect cluster of three siblings and a neighbor was defined. The four cluster members were hospitalized last Thursday. Two were unconscious, and there has been no update on test results from these patients.

More information on their status would be useful.
 

JPD

Inactive
Post Publication Hoarding of H5N1 Sequences by The WHO

http://www.recombinomics.com/News/11210602/H5N1_Hoarding_Post.html

Recombinomics Commentary
November 21, 2006

Most journals now expect that DNA and amino acid sequences that appear in articles will be submitted to a sequence database before publication.

The above instructions to submitters of sequences to Genbank reflect the requirements for most major peer reviewed journals. The underlying premise of peer review publications require authors to include information needed for independent confirmation of the results being published.

In the past, WHO and consultants have withheld H5N1 sequences until publication. This hoarding of data prevents independent analysis of a rapidly evolving H5N1 genome. Such hoarding is curious, since the hoarders frequently receive samples for independent confirmation of H5N1 per WHO requirements. Thus, although the samples are collected by public health agencies, the data is withheld from the public by the WHO affiliated labs until publication.

However, the sequence hoarders have now extended the hoarding beyond publication. This has been done in two recent high profile publications.

One publication, in the Proceedings of the National Academy of Science (PNAS) on the spread of the Fujian strain of H5N1 in southern China, has sparked considerable controversy and requests by the WHO for China to release more H5N1 samples and sequences.

The second publication, in Nature, focused on changes in the receptor binding domain that increased affinity for human receptors. Both papers are heavily dependent on sequence data, and both papers use data that is being hoarded the the WHO private database.

The private database has thousands of withheld H5N1 sequences. One of the largest hoarders has been Weybridge, which received H5N1 samples from birds, mammals, and humans collected throughout Europe and the Middle East during last season's H5N1 outbreak.

Sequences from one bird in Turkey, four patients in Turkey, and one patient in Azerbaijan have been released in the past few months. However, a presentation of the spread of H5N1 in Europe in 2006 included phylogenetic trees (here and here), which contain approximately 80 HA Qinghai sequences that had been completed by the presentation date, May 30, 2006. Since there are 8 gene segments per isolate, and the presentation did not included human isolates, it is likely that well over 1000 sequences are currently being hoarded by Weybridge, even though many samples were collected over a year ago, and others were from the beginning of 2006.

The sequences in the PNAS paper were from 406 H5N1 isolates collected in southern China in 2005 and 2006. 406 isolates would generate 3248 gene sequences, but only 556 were released (404 full or partial HA sequences and 152 PB2 sequences). The paper discusses the genotypes of the isolates, which require sequence data for all eight gene segments from each isolate. The paper also discusses amantadine resistance, which is based on the sequence of the M2 gene. The paper includes accession numbers for the 556 sequences described above. There were no sequences released for six gene segments (PB1, PA, NP, NA, MP, NS).

The Nature paper described receptor binding domain changes in various H5N1 isolates from Vietnam and Thailand patients. Although the paper included the amino acid changes of the southeast Asian clones, the nucleic acids sequences from these clones were withheld. The paper repeatedly states that these changes were "mutations", but fails to provide sequence data that would include the silent changes in the RNA, which would contain data relevant to the "mutation" claim.

One of the changes discussed in the paper was S227N, which was found in one of the clones from a patient from Vietnam. This change had been predicted based on recombination, and the prediction on the precise nucleotide change was made prior to the detection of such changes in Turkey and Egypt. These isolates had the predicted nucleotide change, which was confirmed by the nucleotide sequences deposited by others at GenBank. The precise change could not be determined from the protein sequence, because of the redundancy in the genetic code. The change in the Vietnamese clone, or an earlier isolate, A/VN/JP12-2/05, from another Vietnam patient, can not be determined, because these sequences are being hoarded by WHO in its private database, even though papers on both sequences have now been published (the earlier isolate was published by the WHO Global Influenza Surveillance Network in Emerging Infectious Diseases).

In addition, the Nature paper cited detection of N186K and Q196R in Qinghai H5N1 isolates from patients in Azerbaijan and Iraq. These changes could not be confirmed, because sequences from these patients are also being hoarded in the WHO database.

Thus, the WHO is currently hoarding more H5N1 sequences than any agency, yet it requests samples and sequences from China, because of the importance of such sequences in the monitoring of the evolution of H5N1, which is required for the creation of updated diagnostic primers, as well as new vaccine targets.

WHO consultants have expressed the view that such vaccine targets could not predicted because the changes in H5N1 are due to random mutations. However, the public H5N1 sequences, as well as other influenza serotypes, have clear examples of recombination, which create new gene sequences by using previously identified changes. Similarly, the single nucleotide changes, which are considered as point mutations by the WHO consultants, can also be readily identified in reported sequences, including H5N1 sequences that are likely to be involved in dual infections via transport and transmission by wild birds.

As the sequence data accumulations, the "random mutation" explanations becomes less tenable. The NIAID has a flu sequencing project which will generate full sequences at no cost, yet the H5N1 sequences database is littered with partial sequences from published H5N1 collected since 1999. The generation and release of full sequences from these isolates would provide a more complete evolution of H5N1 and provide more examples of obvious recombination.

The hoarding of the sequences by WHO and consultants continue to be hazardous to the world's health.

The post-publication hoarding has set a new transparency low.
 

JPD

Inactive
Dead birds raise avian flu fears in Somalia

http://www.alertnet.org/thenews/newsdesk/L22933713.htm

By Ibrahim Mohamed

JOWHAR, Somalia, Nov 22 (Reuters) - Dozens of dead birds in a flood ravaged village in Somalia have raised fears of an avian flu outbreak in a country with limited health facilities, officials said on Wednesday.

The carcasses of the dead birds, which were thought to be ducks, were found in Elbaraf, 55 km (34 miles) north of the town of Jowhar, local veterinarian Ali Hamud told Reuters.

"We burnt 51 carcasses," Hamud said.

Scientists have suggested that migratory birds play an important role in the spread of the deadly H5N1 flu virus, which originated in Asia and has killed more than 150 people worldwide so far.

Hamud said most of the birds found had tags around their feet and necks indicating they had been come via the "Orient Institute" in Zagreb, Croatia.

Somalia is already battling floods that have submerged villages and farmland and washed away bridges and food stocks.

"We don't have the capacity to test the birds here for bird flu or other diseases. Floods are already ravaging villages here and the last thing we want is an epidemic," Hamud said.

Resident Nur Jimale said the birds were spotted 10 days ago in flocks of hundreds.

"We fear the unusual birds have brought diseases with them. I just saw their carcasses lying everywhere yesterday. I have never seen such birds in Somalia," he said.

Already one of the poorest countries in Africa, Somalia has lost tens of thousands of people to conflict and famine since 1991.
 

JPD

Inactive
How to Prepare for “Sheltering-In-Place”
US State Department

http://www.travel.state.gov/travel/tips/health/health_3096.html

Avian Influenza

Health professionals are concerned that the continued spread of a highly pathogenic avian influenza (H5N1) virus among animals in Asia, Africa, the Middle East and Europe has the potential to significantly threaten human health. If a virus such as H5N1 mutates and spreads easily from one person to another, avian influenza may break out globally. While there are no reports of sustained human-to-human transmission of avian influenza, the U.S. government and international health agencies are preparing for a possible pandemic.

Depending on the severity of a pandemic, commercial airlines might drastically curtail or even cease operations. Travel restrictions could also impede people from returning to the United States or fleeing to other countries. For these reasons, it may make more sense to “shelter-in-place” (i.e., stay home and practice “social distancing” to avoid contagion) for an appropriate period of time.

United States Residents: The Department of Health and Human Services suggests that US residents prepare two weeks of emergency supplies (food, water, medicines, etc.) in order to shelter-in-place during an influenza pandemic.

American Citizens Abroad: Due to varying conditions overseas, Americans abroad should evaluate their situation and prepare emergency supplies accordingly (non-perishable food, potable water, medicines, etc.) for the possibility of sheltering-in-place for at least two and up to twelve weeks. Water purification techniques such as boiling, filtering and/or adding chlorine to locally available rainwater, swimming pools, lakes, rivers and wells may replace the need to store large quantities of water.

What can you do on a daily basis? Cover your cough. Wash your hands regularly with soap and water for at least 20 seconds to eradicate viruses and bacteria or apply a hand sanitizer with a minimum of 60% alcohol content when soap and water are not available. Stay home if you are sick. Vaccinate yourself against seasonal flu.

Travel: American citizens living in or traveling to countries with human or animal cases of H5N1 virus should consider the potential risks. Keep informed of the latest medical guidance and practical information and plan accordingly. Consult www.travel.state.gov for the latest tips on international travel.

On-Line Resources: Detailed information about suggested preparations, as well as planning checklists, are available on the U.S. government’s one-stop web site on pandemic influenza (www.pandemicflu.gov),
also the World Health Organization (www.who.int/en/) and
the Centers for Disease Control (www.cdc.gov) websites.
 

JPD

Inactive
Outbreaks Show Bird Flu Virus Is Changing

http://www.forbes.com/forbeslife/health/feeds/hscout/2006/11/22/hscout536220.html

11.22.06, 12:00 AM ET

WEDNESDAY, Nov. 22 (HealthDay News) -- Detailed data on clustered human cases of avian flu have experts agreeing that the H5N1 virus is evolving -- but in what direction?

"The virus is always changing, and the mutations that make it more compatible with human transmission may occur at any time," warn Drs. Robert Webster and Elena Govorkova, both virologists at St Jude's Children's Research Hospital in Memphis, Tenn.

Their commentary accompanies reports from Indonesia and Turkey, both published in the Nov. 23 issue of the New England Journal of Medicine.

However, another expert believes that, so far, H5N1 has given no indication it is mutating toward human-to-human transmission.

"It's far from a certainty," said Dr. Marc Siegel, a clinical associate professor of medicine at New York University School of Medicine, and author of Bird Flu: Everything You Need to Know About the Next Pandemic. "The virus could move closer to human-to-human transmission, and it could move farther away. I don't think that you can conclude from these articles in the NEJM that the thing is becoming easier to transmit."

The two studies' most basic data is not new. They focus on three clusters of H5N1 infection in Indonesia in mid-to-late 2005, involving four deaths, and an eight-patient cluster treated in the first weeks of 2006 at a hospital in far-eastern Turkey. Four of the Turkish patients died.

Details published in the journal do point to some intriguing trends, however.

As noted in other cases, almost all infections were linked to close handling of domestic fowl. More troubling was the fact that the Turkish group, led by Dr. Ahmet Oner, of Yuzuncu Yil University, in Van, found it very difficult to diagnose H5N1 in humans at its earliest stages.

Two standard tests turned up negative for the virus, and only a high-tech "polymerase-chain-reaction assay" confirmed H5N1 as the culprit. Infection also "causes a wide spectrum of illnesses in humans," the study authors wrote, with symptoms varying widely among patients.

In the Indonesian report, led by epidemiologist Dr. Timothy Uyeki of the U.S. Centers for Disease Control and Prevention, researchers found that H5N1 affected some patients more severely than others, suggesting that there are genetic factors influencing patient vulnerability. They also noted that certain drugs, such as oseltamivir (Tamiflu), could help fight the predominant Indonesian strain, but these drugs are only effective when given a day or two after infection. That's probably too early for most patients, however.

"In the countries that have reported human H5N1 cases, patients generally do not seek medical care early in their illness," Uyeki explained. "They usually present for medical care when their illness is advanced, e.g., they have pneumonia, and therefore they are not able to receive early oseltamivir treatment."

In their commentary, Webster and Govorkova noted that the number of documented human cases of H5N1 infection is rising worldwide. A total of 251 cases have been recorded globally since 1997, they said, and "by mid-August, 97 humans had been infected in 2006 -- the same number as in all of 2005."

No definite case of human-to-human transmission has yet been reported, suggesting that "the current H5N1 virus is apparently not well 'fitted' to replication in humans," the two experts wrote. However, "the intermittent spread to humans will continue, and the virus will continue to evolve," they added. "Clearly, we must prepare for the possibility of an influenza epidemic."

Siegel believes this kind of language can be misleading.

"We don't know enough about H5N1, and the science hasn't evolved to the point where we can predict when an epizoonotic problem -- a disease that has killed a lot of birds -- is going to start killing a lot of humans," he said.

And, while reports do suggest a rise in human cases over time, Siegel noted that, prior to 1997, no one was keeping close tabs on the epidemiology of H5N1. "I think there may have been previous clusters that might have gone unreported because of a lack of attention -- they may have been misdiagnosed as other kinds of flu," he explained.

Underreporting of prior outbreaks means it also impossible to say that the avian flu is mutating in any one direction, Siegel said. "There's just no way of telling from these clusters that this virus is evolving in the direction of easier transmission -- we can't tell if these clusters are anything new, or if there was a precedent for them," he said.

Finally, he said, H5N1's genetic "leap" to human-to-human transmission -- if it ever happens -- will be much tougher than media reports have let on.

"I've talked to a top expert at the U.S. National Institutes of Health," Siegel said. "He has tried [in the lab] to manipulate H5N1 to make it transmit more easily human-to-human, and he hasn't been able to do it. He's tried different mutations, including using proteins from the 1918 Spanish flu."

While that doesn't mean the right combination of random mutations won't happen in the natural world, it suggests that a bird flu pandemic is a possibility -- but not a certainty. "There's no sense of 'imminence' here," Siegel said.

All of the experts agreed that more needs to be done to curb the spread of the virus among birds, however.

"H5N1 viruses are a 'moving target' and are evolving globally," Uyeki said. "Therefore, what is needed is ongoing, expanded surveillance of highly pathogenic avian influenza A (H5N1) viruses in animals (including poultry and wild birds) and humans in many countries."

Webster and Govorkova noted that countries that have implemented tough, bird-focused interventions did reduce the threat. But with winter approaching, they worry that H5N1 will finally make its way from Eurasia to the Americas via migrating flocks.

However, Siegel said, vaccinating every bird in the United States does not make sense right now. That's because the virus would simply go "underground," infecting fowl but not producing outward symptoms.

"You want to vaccinate susceptible populations, and then control outbreaks by killing affected birds," Siegel said.

But he also stressed that, "here, in the U.S., we as yet have no birds that have this virus. We don't even have a problem yet, except for fear."
 
Last edited:

JPD

Inactive
H5N1 Influenza — Continuing Evolution and Spread

http://content.nejm.org/cgi/content/full/355/21/2174

Robert G. Webster, Ph.D., and Elena A. Govorkova, M.D., Ph.D.

There is no question that there will be another influenza pandemic someday. We simply don't know when it will occur or whether it will be caused by the H5N1 avian influenza virus. But given the number of cases of H5N1 influenza that have occurred in humans to date (251 as of late September 2006) and the rate of death of more than 50%, it would be prudent to develop robust plans for dealing with such a pandemic.

The epicenters of both the Asian influenza pandemic of 1957 and the Hong Kong influenza pandemic of 1968 were in Southeast Asia, and it is in this region that multiple clades of H5N1 influenza virus have already emerged. The Asian H5N1 virus was first detected in Guangdong Province, China, in 1996, when it killed some geese, but it received little attention until it spread through live-poultry markets in Hong Kong to humans in May 1997, killing 6 of 18 infected persons (see map and time line). The culling of all poultry in Hong Kong ended the first wave of H5N1, but the virus continued to circulate among apparently healthy ducks in the coastal provinces of China.


The shaded area across southern China is the hypothetical epicenter for the emergence of H5N1 clades and subclades. The H5N1 viruses are being perpetuated in the domestic birds of the region, despite the use of universal vaccination of all domestic poultry. The red dot in the time line denotes the occurrence of the first human case, followed by the number of confirmed human cases in that country. The green and blue solid bars represent documented H5N1 infection in domestic poultry and wild birds, and dashed bars indicate that H5N1 in the avian population is suspected. These limited surveillance data are adapted from the World Health Organization and the U.N. Food and Agriculture Organization (www.fao.org). HA denotes hemagglutinin.


From 1997 to May 2005, H5N1 viruses were largely confined to Southeast Asia, but after they had infected wild birds in Qinghai Lake, China, they rapidly spread westward. The deaths of swans and geese marked H5N1's spread into Europe, India, and Africa. Infections with highly pathogenic H5N1 viruses were confirmed in poultry in Turkey in mid-October 2005, and the first confirmed human cases in Turkey occurred in early January 2006. Thus, H5N1 influenza viruses continue to emerge from the epicenter.

The H5N1 viruses can be divided into clade 1 and clade 2; the latter can be further subdivided into three subclades. The bad news is that these clades and subclades probably differ sufficiently in their antigenic structure to warrant the preparation of different vaccines. Studies in ferrets suggest that vaccine against one clade will not protect against infection with another clade, though it will protect against influenza-associated death.1 Thus, the available information supports the notion that a vaccine against H5N1 is worth stockpiling as a "prepandemic" vaccine, since very few persons have been immunologically exposed to H5 antigens and priming with one clade may be beneficial.

Another key question is whether these clades and subclades vary in sensitivity to available anti-influenza drugs. The majority of H5N1 clade 1 viruses (e.g., A/Vietnam/1203/2004) are resistant to the adamantanes (amantadine and rimantadine), but the majority of clade 2 viruses (e.g., A/Indonesia/5/2005) are sensitive. All H5N1 viruses that have been tested are sensitive to the neuraminidase inhibitors; these drugs may be effective when used prophylactically, but the window for effective treatment will probably be limited to 1 to 2 days after initial infection. Kandun et al. make clear in their report in this issue of the Journal (pages 2186–2194) on three clusters of patients with H5N1 infection in Indonesia that the difficulty with the use of a neuraminidase inhibitor (oseltamivir) in those cases was that treatment began 5 to 7 days after initial infection. Such delayed administration of the drug limits its value in decreasing the viral load and might lead to the selection of resistant strains.

The use of rapid diagnostics for H5N1 virus infection can permit specific antiviral treatments to be initiated early. Oner et al. report in this issue of the Journal (pages 2179–2185) that in a human outbreak of H5N1 in Turkey, it was difficult to detect H5N1 virus infection with standard techniques; the authors found that a real-time polymerase-chain-reaction assay performed on nasopharyngeal specimens had the best diagnostic value.

The continuing evolution of H5N1 viruses and the clusters of human infections in Indonesia and Turkey raise important questions. First, can the source of H5N1 be eliminated? And second, is the increasing number of clusters of human infection an indicator of evolution toward consistent human-to-human transmission?

Controlling H5N1 influenza by eradicating it at the source in domestic poultry has worked for some wealthy countries: in 2003, Japan and South Korea eradicated H5N1 through a strategy of quarantine and culling of poultry and implementation of improved biosecurity measures for poultry facilities. In Thailand, however, the same strategy resulted in only a temporary respite; after nearly a year with no H5N1 activity, new cases in humans in July 2006 heralded the resurgence of H5N1 in domestic poultry.

An alternative strategy adopted by China, Indonesia, and Vietnam has been to vaccinate uninfected poultry in conjunction with the quarantine and culling of infected birds. This approach has failed, however, and its critics explain that poultry vaccines are largely of poor quality, do not provide sterilizing immunity, and promote antigenic drift. Yet vaccines against H5N1 influenza virus have been used successfully since 2004 on all poultry sold in Hong Kong, where no H5N1 virus has been isolated from fowl in live-bird markets despite extensive prospective surveillance.

Perhaps the most important experiment in controlling H5N1 is one that is ongoing in Vietnam. Since the country adopted a strategy of vaccinating all poultry with inactivated, oil-emulsion H5N1 vaccine, there have been no additional cases in humans and no reported H5N1 infections in chickens. But in September 2006, H5N1 was reported to have reemerged in ducks and geese in Vietnam. Thus, H5N1 influenza vaccine seems to protect chickens and, indirectly, humans, but probably not waterfowl.

Given that the vaccine predominantly used in Vietnam is prepared in China, where the policy is to vaccinate all poultry, some have questioned why H5N1 is not under control in China. The problem may be the lack of protection in waterfowl. Ducks may be the stealth carriers (the Trojan horses of H5N1 influenza), for wild mallard ducks do not always show signs of disease when infected with any of a range of highly pathogenic H5N1 viruses.2 Our knowledge about the efficacy of H5N1 influenza vaccines in domestic waterfowl is limited, and highly pathogenic H5N1 viruses continue to be isolated from waterfowl in the epicenter of the epidemic. If the reservoir of highly pathogenic H5N1 virus is domestic waterfowl, the virus should theoretically be eradicable, but eliminating it would require improved vaccines for waterfowl and draconian prospective surveillance and culling.

Meanwhile, the number of infections in humans continues to increase. By mid-August, 97 humans had been infected in 2006 — the same number as in all of 2005. Perhaps the most surprising thing about highly pathogenic H5N1 is that although more than 230 million domestic birds have died or been killed, only 251 humans have become ill from H5N1 infection, and there has been little or no evidence of subclinical infection in humans. The current H5N1 virus is apparently not well "fitted" to replication in humans, although the genetic makeup of a small proportion of humans supports attachment and replication of the virus, if not its transmission. The specific receptor for the current avian influenza virus ({alpha}2-3 sialic acid) is found deep in the respiratory tract of humans,3 but it seems likely that only a minority of people have receptors for avian influenza viruses in their upper respiratory tracts. Moreover, receptor specificity is only one of the requirements for human infection; the virus must also find compatible enzyme systems in the infected human cells if the viral polymerase complex is to function. Currently, these conditions are apparently met in only a few persons. But the virus is always changing, and mutations that make it more compatible with human transmission may occur at any time.

The seasonality of H5N1 influenza seems similar to that of human influenza: the virus has apparently been more transmissible among chickens, and consequently to humans, during the cooler months. The cases in humans in Turkey, Iraq, and Egypt occurred during the cooler months and coincided with explosive outbreaks of the disease in wild and domestic poultry. In the tropical areas of Asia, there have been two resurgences of H5N1 during the warmer months of the year — a pattern that resembles that followed by human influenza in the tropics, with its multiple peaks of activity. With winter approaching in the northern hemisphere, H5N1 may spread further. Will it cross from Eurasia to the Americas? Will wild migratory birds carry it from their breeding sites in northern Europe and Siberia to commercial poultry in Europe, Africa, and America? If it is endemic in wild migratory birds that are not rapidly killed by it, then spread to domestic backyard poultry is inevitable. The intermittent spread to humans will continue, and the virus will continue to evolve.

Clearly, we must prepare for the possibility of an influenza pandemic. If H5N1 influenza achieves pandemic status in humans — and we have no way to know whether it will — the results could be catastrophic.

Drs. Webster and Govorkova report receiving research funding from Hoffmann–La Roche and BioCryst Pharmaceuticals. Dr. Webster reports receiving consulting fees from GlaxoSmithKline; and Dr. Govorkova, consulting fees from BioCryst Pharmaceuticals. No other potential conflict of interest relevant to this article was reported.


Source Information

Dr. Webster is a professor and Dr. Govorkova a senior scientist in the Department of Infectious Diseases, Division of Virology, St. Jude Children's Research Hospital, Memphis, TN.

References

1. Govorkova EA, Webby RJ, Humberd J, Seiler JP, Webster RG. Immunization with reverse-genetics-produced H5N1 influenza vaccine protects ferrets against homologous and heterologous challenge. J Infect Dis 2006;194:159-167. [CrossRef][ISI][Medline]

2. Hulse-Post DJ, Sturm-Ramirez KM, Humberd J, et al. Role of domestic ducks in the propagation and biological evolution of highly pathogenic H5N1 influenza viruses in Asia. Proc Natl Acad Sci U S A 2005;102:10682-10687. [Abstract/Full Text]

3. Shinya K, Ebina M, Yamada S, Ono M, Kasai N, Kawaoka Y. Avian flu: influenza virus receptors in the human airway. Nature 2006;440:435-436. [CrossRef][ISI][Medline]



This article has been cited by other articles:

* (2006). Avian Flu: Deadly, and Difficult to Diagnose. Journal Watch (General) 2006: 1-1 [Full Text]
 

JPD

Inactive
Bird flu hard to detect until too late - studies

http://today.reuters.co.uk/news/CrisesArticle.aspx?storyId=N22213059&WTmodLoc=World-R5-Alertnet-2

Wed 22 Nov 2006 22:00:09 GMT

By Maggie Fox, Health and Science Editor

WASHINGTON, Nov 22 (Reuters) - Quick tests that can tell if patients have influenza do not detect bird flu, so despite heroic efforts, they can die before anyone knows what killed them, doctors reported on Wednesday.

The H5N1 bird flu virus also causes a range of symptoms in people, making it that much harder to diagnose, experts said in two separate reports from Indonesia and Turkey.

In Turkey, repeated testing failed to diagnose H5N1 avian influenza in eight patients, one team of doctors reported in the New England Journal of Medicine.

In Turkey and in Indonesia, patients turned up with a wide variety of symptoms, even in family clusters, making it hard to distinguish H5N1 from a range of other common infections, another team said.

Dr. Ahmet Faik Oner, Dr. Mehmet Ceyhan, and colleagues at Yuzuncu Yil University Hospital in Van, Turkey said they hope their detailed findings can help other experts battling avian influenza, which remains largely a disease of birds but which occasionally infects humans.

Bird flu has infected 258 people in 10 countries and killed 153 of them. Experts say the danger is that the virus will evolve and spark a pandemic that could kill millions.

"There is no question that there will be another influenza pandemic someday. We simply don't know when it will occur or whether it will be caused by the H5N1 avian influenza virus," Dr. Robert Webster and Dr. Elena Govorkova of the Memphis, Tennessee-based St. Jude Children's Research Hospital wrote in a commentary on the two reports.

Dr. Anthony Fauci of the U.S. National Institute of Allergy and Infectious Diseases, who was not involved in the studies, said they gave useful details about the newer strain, called clade 2, of the virus.

"It's important that as these viruses evolve from one clade to another that we get a good, clear description of the type of disease, the transmission of the disease and ability of diagnostics to pick it up," Fauci said in a telephone interview.

TURKISH CHILDREN

Oner's team fought an outbreak of H5N1 in children in Turkey between Dec. 31, 2005, and Jan. 10, 2006.

They said 32 separate tests failed to detect the virus -- not only quick tests, but time-consuming polymerase chain reaction or PCR tests and ELISA tests, which look for specific proteins from viruses or bacteria.

Eventually, eight patients were diagnosed using real-time PCR, the researchers said. Four died.

"In our series, fever was a major symptom, and most of our patients had pneumonia on admission," they wrote. Most had cough and sore throat, but only half reported muscle aches and only one had a runny nose. About a third had diarrhea.

Certain blood enzyme levels were elevated in most of the patients and that may be an important clue, they said.

In a second report, a team of researchers from the World Health Organization, the U.S. Centers for Disease Control and Prevention, the Ministry of Health in Jakarta and elsewhere said rapid tests also failed to detect the virus when they fought three family clusters of H5N1 in 2005.

The clusters "included mild, severe, and fatal cases among family members," they wrote. Despite the use of multiple antibiotics, breathing assistance and other care, half the patients died.

Last week, a team at the University of Colorado at Boulder and the CDC reported they had developed an inexpensive and quick "gene chip" test that might identify flu viruses, including H5N1. Fauci said that test would have helped in Turkey and Indonesia.
 

JPD

Inactive
Korea

Suspected Bird Flu Reported in Iksan

http://times.hankooki.com/lpage/biz/200611/kt2006112317452011870.htm

By Kim Yon-se
Staff Reporter

A suspected outbreak of bird flu was reported at a chicken farm in Iksan, North Cholla Province, the Ministry of Agriculture and Forestry said Thursday, affecting a group of brood hens. The ministry said that depending on the type of avian influenza, the highly contagious virus could be transmitted to humans.

The farm is a subcontractor of Korea’s largest chicken meat provider, Halim, which has more than a 30 percent market share. The plant supplies young chicks to Halim by raising thousands of brood hens.

The National Veterinary Research & Quarantine Service detected the suspected bird flu in the provincial city and the ministry has dispatched a group of inspectors for a detailed investigation.

``It will take several days for us to finish investigations into whether it is real avian influenza and of what type,’’ said Ministry spokesman Lee Yang-ho. In an emergency news briefing, the ministry said about 6,000 out of 13,000 brood hens in the plant died between last Sunday and Wednesday.

If the government confirms the influenza as a type that can be transmitted to people, it will issue a nationwide bird flu warning, cautioning against the arrival of migratory birds from northern countries.

The bird flu virus, previously limited to Southeast Asia, has been found among migratory birds in China, Russia, Kazakhstan and Mongolia since last year.

Halim, also located in Iksan, shut down its online homepage for several hours after the suspected outbreak was reported.
 

JPD

Inactive
SOMALIA: Unidentified birds raise avian flu fears

http://www.irinnews.org/report.asp?ReportID=56485&SelectRegion=Horn_of_Africa&SelectCountry=SOMALIA

NAIROBI, 23 Nov 2006 (IRIN) - Dozens of unidentified birds have been found dead in a village in the Middle Shabelle region, south-central Somalia, raising fears of an outbreak of bird flu in the country, according to local sources in the regional capital Jowhar, 90 km north of the national capital, Mogadishu.

"Fifty-two birds arrived in the village of Eil Baraf [50 km dead north of Jowhar] 10 days ago," said Muhammad Ibrahim Malimow, a local resident. "They looked like ducks, so no one paid them any attention until they started dying."

He said this raised fears among the locals who "raised the alarm".

According to specialists, migratory birds play an important role in the spread of the deadly H5N1 flu virus.

Muhammad Ali, a veterinarian of the Somali Animal Health Service Project, who went to Eil Baraf to investigate, told IRIN that "the birds all had tags with Orint. Institute, Zagreb Croatia on them, which tells us that they were migratory birds from that country."

He said by the time his team got to the village the birds were decomposing, "and would not lend themselves to proper examination so we burned them to avoid the possibility of spreading anything".

Ali said that so far there were no indications to suggest they may have infected the local birds with anything.

"We have asked the villagers to report any changes in their domestic birds and so far nothing. We are also appealing to other nearby villages to do likewise," he added.

The region, like the rest of Somalia, is suffering from flooding that has displaced hundreds of thousands of people after torrential rain swelled rivers, submerging hundreds of villages in a country without much infrastructure after 16 years of civil strife.

Malimow said that many residents are worried that the birds may have brought "any new and unknown disease into the country. People are already suffering."
 

JPD

Inactive
Three years into H5N1 outbreak,
new research highlights how little is known

http://www.cbc.ca/cp/health/061122/x112219A.html

Published: Wednesday, November 22, 2006 | 8:14 PM ET
Canadian Press: HELEN BRANSWELL

(CP) - Three years into the outbreak of the H5N1 avian flu virus, two international teams of researchers scored major scientific credibility points Wednesday when the New England Journal of Medicine published their articles on the diagnosis and treatment of a mere 16 H5N1 patients.

With the official World Health Organization case count hovering near 260 human cases and 153 deaths from 10 countries, it might seem that the problems Turkish doctors experienced diagnosing eight patients in January or the investigation of three clusters of Indonesian patients last year wouldn't rate publication in the world's most prestigious medical journal.

But in fact, there is so little clinical and epidemiological information about H5N1 disease in the scientific literature that experts are eagerly welcoming the addition.

"Boy, it would just be nice to have more of this information out there," Dr. Keiji Fukuda, who heads the WHO's global influenza program, said in an interview from Geneva.

"It's tough. It's not easy getting this information."

A deputy editor of the journal agreed the information charting the virus in people is sparse.

"The number of documented human cases of H5N1 and the number of deaths attributed to it - well-characterized - is still a relatively small number," Dr. Lindsey Baden explained.

"We as a scientific and public health community need to have well-characterized the known human cases so that appropriate lessons can be learned."

Potential lessons from these papers include the observation by the Turkish researchers - from Yuzuncu Yil University in Van - that laboratories inexperienced with testing for H5N1 may have trouble confirming infections. They urged doctors in areas where there are H5N1 outbreaks in poultry to repeat sample taking and testing if initial tests come up negative for patients manifesting an H5N1-like disease.

The Indonesian paper points to the need to follow up with contacts of H5N1 patients. Three of the eight patients reported in the article experienced only mild disease and only came to light when investigators looked for illness in hospitalized cases.

The article noted limited human-to-human transmission may have occurred in two of the three clusters.

Both papers noted that diarrhea was rare among their H5N1 patients - a departure from the case description already in the medical literature. That may be due to the fact that the Turkish and Indonesian cases were caused by a different subgroup of viruses (called a clade) than cases outlined in earlier reports. But one of the authors of the Indonesia paper cautioned against drawing too many conclusions on too few patients.

"It would be interesting to look at clade 2 (infections) versus clade 1 (cases)," said Dr. Tim Uyeki of the U.S. Centers for Disease Control.

"But right now, it's not quite fair to do that. . . . There's a need for more epidemiological and clinical data on H5N1 patients."

The WHO is hoping to fill those knowledge gaps more efficiently in the future.

Scientists working with Fukuda are devising a checklist of basic information they hope attending doctors will collect for each future case of H5N1 infection - recording when people got sick, what symptoms they experienced, what their blood testing showed, which drugs they received and when, how patients responded, and which survived.

"Because there's no place that's having - fortunately - large numbers of cases, the only way to try to do this in a meaningful way is to collect as many of the cases from the different countries as possible," Dr. Frederick Hayden, a WHO scientist involved in the project, explained in a recent interview.

Collecting and sharing standardized information is the only way to start teasing out answers to the myriad questions that continue to puzzle scientists. With so many people exposed to this virus, why do so few get sick? Why do so many clusters of cases among blood relatives occur? Why do children make up such a disproportionate number of the total cases?

When considering the slow accumulation of H5N1 data, it's tempting to contrast it against the world's most recent emerging infectious disease experience - SARS.

But Dr. Malik Peiris - a leading SARS and influenza expert from the University of Hong Kong and an author of the Indonesian paper - cautioned that the analogy isn't a good one.

SARS exploded, triggering major outbreaks in places like Hong Kong, Taiwan, Hanoi and Toronto. The large volume of cases in teaching hospitals steeped in a tradition of research led to the rapid unravelling of an impressive number of SARS mysteries.

By comparison, H5N1 cases have occurred in random fashion in remote locales - villages in Cambodia, Indonesia, Vietnam, Azerbaijan, even war-torn Iraq.

"Here the cases are so dispersed," Peiris said. "There are so many clinicians involved, so many people involved, I think it makes it very difficult to pull these cases together from many different hospitals into one single analysis."

An infectious diseases expert not involved with the papers noted that it's not surprising so many questions remain about H5N1, given the enormous number of mysteries that remain unanswered about seasonal influenza.

"There are many, many questions with regard to influenza that have really only been recognized as important issues over the past 36 months," said Dr. Michael Osterholm, director of the University of Minnesota's Center for Infectious Diseases Research and Policy.

"We want to basically have this breadth of information (about H5N1) that's far and wide, and how do you do it when you're dealing with a disease that's only had 250-some cases documented from beginning to end right now?"

Even with a standardized form for data collection, accumulating information about the disease will remain challenging if cases continue to occur here and there in remote parts of the globe.

"Those very painstakingly developed studies and systems require people to come in - and that's a complete haphazard thing," Fukuda said.
 

JPD

Inactive
Ivory Coast records isolated case of bird flu

http://www.todayonline.com/articles/156608.asp


An isolated case of bird flu has been discovered in turkeys in Ivory Coast, the first since the last outbreak in the capital six months ago, health authorities said.
.
"Results of samples ... from two turkeys that died November 9, made it possible to detect on November 17, an isolated case of avian flu caused by the H5N1 virus," the livestock production ministry said in a statement.
.
The tests were carried out at a veterinary laboratory in Bingerville, near Abidjan.
.
The two turkeys came from a livestock camp on a village on the outskirts of Abidjan.
.
Health and sanitary measures have been put in place and people exposed to the birds are under medical supervision, said government.
.
The Ivorian government announced in early September the end of a ban on poultry imports that it imposed in May after bird flu was discovered near the economic capital Abidjan.
.
After containing the outbreak in June, the government authorized the reopening of the city's poultry markets shut since May.
.
To eradicate the virus, a large-scale disinfection of affected poultry farms, slaughter houses and the market itself was carried out.
.
Some 2,000 domestic fowls were culled and authorities ordered 12 million doses of animal vaccine to halt the spread of the H5N1 strain of bird flu. The strain is consistently lethal to birds and has also killed more than 150 people worldwide since late 2003.
.
The Ivory Coast's poultry sector counts some 30 million fowl, generates more than 60 million euros (78 million dollars) in revenue, and employs 15,000 people. — AFP
An isolated case of bird flu has been discovered in turkeys in Ivory Coast, the first since the last outbreak in the capital six months ago, health authorities said.
.
"Results of samples ... from two turkeys that died November 9, made it possible to detect on November 17, an isolated case of avian flu caused by the H5N1 virus," the livestock production ministry said in a statement.
.
The tests were carried out at a veterinary laboratory in Bingerville, near Abidjan.
.
The two turkeys came from a livestock camp on a village on the outskirts of Abidjan.
.
Health and sanitary measures have been put in place and people exposed to the birds are under medical supervision, said government.
.
The Ivorian government announced in early September the end of a ban on poultry imports that it imposed in May after bird flu was discovered near the economic capital Abidjan.
.
After containing the outbreak in June, the government authorized the reopening of the city's poultry markets shut since May.
.
To eradicate the virus, a large-scale disinfection of affected poultry farms, slaughter houses and the market itself was carried out.
.
Some 2,000 domestic fowls were culled and authorities ordered 12 million doses of animal vaccine to halt the spread of the H5N1 strain of bird flu. The strain is consistently lethal to birds and has also killed more than 150 people worldwide since late 2003.
.
The Ivory Coast's poultry sector counts some 30 million fowl, generates more than 60 million euros (78 million dollars) in revenue, and employs 15,000 people. — AFP
An isolated case of bird flu has been discovered in turkeys in Ivory Coast, the first since the last outbreak in the capital six months ago, health authorities said.
.
"Results of samples ... from two turkeys that died November 9, made it possible to detect on November 17, an isolated case of avian flu caused by the H5N1 virus," the livestock production ministry said in a statement.
.
The tests were carried out at a veterinary laboratory in Bingerville, near Abidjan.
.
The two turkeys came from a livestock camp on a village on the outskirts of Abidjan.
.
Health and sanitary measures have been put in place and people exposed to the birds are under medical supervision, said government.
.
The Ivorian government announced in early September the end of a ban on poultry imports that it imposed in May after bird flu was discovered near the economic capital Abidjan.
.
After containing the outbreak in June, the government authorized the reopening of the city's poultry markets shut since May.
.
To eradicate the virus, a large-scale disinfection of affected poultry farms, slaughter houses and the market itself was carried out.
.
Some 2,000 domestic fowls were culled and authorities ordered 12 million doses of animal vaccine to halt the spread of the H5N1 strain of bird flu. The strain is consistently lethal to birds and has also killed more than 150 people worldwide since late 2003.
.
The Ivory Coast's poultry sector counts some 30 million fowl, generates more than 60 million euros (78 million dollars) in revenue, and employs 15,000 people. — AFP
 

Hermit

Inactive
SARS exploded, triggering major outbreaks in places like Hong Kong, Taiwan, Hanoi and Toronto. The large volume of cases in teaching hospitals steeped in a tradition of research led to the rapid unravelling of an impressive number of SARS mysteries.

By comparison, H5N1 cases have occurred in random fashion in remote locales - villages in Cambodia, Indonesia, Vietnam, Azerbaijan, even war-torn Iraq.

"Here the cases are so dispersed," Peiris said. "There are so many clinicians involved, so many people involved, I think it makes it very difficult to pull these cases together from many different hospitals into one single analysis."
This is the problem ..... SARS became dangerous so quickly that all the researchers and the politicians with public funding were all up in arms .... that was true with the bird flu at first, but then everyone got tired of it because nothing much was happening. But now it has circled around and is about to bite us on the ass ..... a series of mutations has made it much closer in several areas like Egypt and perhaps Indonesia and China, to types that can spread easily among humans.
 
Top