2/24/08-3/1/08|Weekly Bird Flu Thread: Pakistan finds new bird flu outbreak

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Pakistan finds new bird flu outbreak

http://www.khaleejtimes.com/Display...ent_February780.xml&section=subcontinent&col=

24 February 2008


ISLAMABAD - Pakistani health officials on Sunday confirmed a new outbreak of bird flu at a farm outside the southern city of Karachi.

It was the third outbreak of the H5N1 avian influenza virus in the Karachi area this month, but limited only to fowl that tested positive at one farm, and no humans were infected.

“It’s a small outbreak in a isolated area,” said Maqbool Jan Abbasi, an official at Pakistan’s Ministry of Health, who said local authorities were slow in realizing the outbreak occurred. “The poultry people should have been more alert.”

He said provincial authorities had alerted local hospitals and dispatched health teams to the area, around 15 kilometres outside Karachi, which is Pakistan’s largest city and financial centre.

“If they find any other evidence they will cull,” he said.

Earlier this month, 12 poultry workers in Karachi were isolated and tested for bird flu following the detection of the H5N1 virus at two poultry farms in the city’s Gadap district.

Pakistan has suffered only one human fatality from bird flu, which occurred late last year in the North-West Frontier Province.

Bird flu has killed at least 232 people worldwide from 366 cases since 2003. The vast majority of human cases come from direct contact with sick birds, but scientists fear the virus may mutate into a form more easily transmissible among humans, possibly killing millions.
 

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Bird flu strikes another Bangladesh district

http://www.straitstimes.com/Latest+News/Asia/STIStory_209872.html

DHAKA - BIRD flu has spread to another district in Bangladesh despite massive culling by authorities to fight the deadly outbreak, officials said, bringing the number of affected districts to 44 out of the country's 64.

The latest outbreak of H5N1 avian flu was detected in Munshiganj, 60 km from Dhaka, while the virus re-emerged in several other districts, livestock officials said on Sunday.

Nearly 911,000 birds have been culled to fight the virus since March 2007, but it continues to spread and now covers more than two-thirds of the impoverished country of more than 140 million people.

Bird flu has caused losses of about 45 billion taka (S$913.7 million) to the poultry sector, which generates more than $1.8 billion annually, industry officials said.

'Nearly 90,000, or 60 per cent of total poultry farms in the country, have been so far shut down due to the direct or indirect effect of bird flu, leaving around 150,000 people out of jobs,' said Mr Syed Abu Siddeque, Secretary General of Bangladesh Poultry Industries Association.

'The government should come forward to save the growing sector by taking different steps, including giving the farmers soft loans and other assistance,' Mr Siddeque said.

No human bird flu cases have been reported in Bangladesh, a densely populated nation with millions of fowl kept in backyards, and thousands of chicken farms.

Experts fear the H5N1 strain could mutate or combine with the highly contagious seasonal influenza virus and spark a pandemic, especially in countries such as Bangladesh where people live in close proximity to backyard poultry.

Contact with sick fowl is the most common way of contracting bird flu. The virus has killed more than 230 people worldwide since 2003. -- REUTERS
 

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As bird flu mutates, scientists worry

http://www.twincities.com/national/ci_8343988

Person-to-person infection rare - for now
BY ROBERT S. BOYD
McClatchy Newspapers
Article Last Updated: 02/23/2008 03:56:55 PM CST

WASHINGTON - Like the rumble of distant thunder, bird flu continues to spread across Asia, Africa and Europe. Although it's been out of the news lately in the United States, scientists say avian influenza, as it's also known, remains a serious threat to human and animal health.

The lethal H5N1 version of the virus is mutating rapidly and rampaging through bird flocks throughout those parts of the world, infecting and often killing people who come in contact with them.

The fear is the virus will change into a form that makes human-to-human transmission quick and easy. At least seven slightly different subtypes already have been identified.

"New genes are being formed all the time," said Henry Niman, a molecular geneticist who tracks bird flu outbreaks around the world.

Although H5N1 hasn't reached the Western Hemisphere, Joseph Domenech, the chief veterinary officer for the U.N. Food and Agriculture Organization, warned in January that it "could still trigger a human influenza pandemic." A pandemic is a worldwide outbreak such as the 1918 Spanish flu, which killed tens of millions of people in the United States and Europe.

The virus "continues to cause human disease with high mortality and to pose the threat of a pandemic," the latest situation report from the World Health Organization says.

As of Feb. 20, bird flu had infected 362 people and killed 228 of them in 14 countries in Asia, Africa and Europe.

In the past year, the WHO confirmed 98 new human cases, including 69 deaths, an alarming 70 percent death rate. It was the second-worst year for bird flu, topped only by 2006, when 115 cases and 79 deaths (69 percent) were reported.

Since the major outbreak in China in 2003, the virus has killed millions of chickens, ducks and geese along with pigs, cats and other mammals in some 50 countries.

Almost all of the people who've been infected caught the disease from close contact with domestic poultry and occasionally from wild ducks, geese or swans. In a handful of cases, scientists think the virus passed from one human to another, usually among relatives or people living close together.

"So far, the spread of H5N1 from person to person has been very rare," the U.S. Centers for Disease Control and Prevention reported.

For example, eight family members in Indonesia caught the disease in 2005, and all but one of them died. A pregnant Chinese woman passed the virus to her 4-month-old fetus last fall. Both died. Four brothers in Pakistan were infected last winter, and two of them died.

"It's pretty clear that was a case of human-to-human transmission," said Niman, founder of Recombinomics, a genetics research firm in Pittsburgh.

Multiple teams of researchers are studying the details of how the virus performs its deadly work. They hope their findings will lead to better vaccines to limit or prevent infection, but the problem is difficult.

Vaccines such as Tamiflu that are used for common seasonal flu offer partial but not complete protection from H5N1. Furthermore, the virus already is developing resistance to these vaccines.

Recent research has discovered several reasons that human-to-human transmission of H5N1 has been limited so far.

For one thing, bird and human viruses have different shapes, according to Ram Sasisekharan, a biological engineer at the Massachusetts Institute of Technology in Cambridge.

To cause infection, the virus must fit a spike on its surface, known as HA, into a hollow "receptor" on the surface of a human cell. The virus that attacks birds fits its HA spike into a cone-shaped receptor. To infect humans, however, the spike must fit into a slightly wider receptor shaped like an open umbrella, Sasisekharan said.

"For animal influenza viruses to cause pandemics in human population, their HA protein must acquire mutations that allow human-to-human transmission," Carole Bewley, a biochemist at the National Institutes of Health in Bethesda, Md., noted in the January issue of the journal Nature Biotechnology.

"Fortunately, this barrier has so far protected us from rapid spread of H5N1."

Eight family members in Indonesia caught the disease in 2005, and all but one of them died.
 

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Not H5N1, but other strains:

U.S. flu season worsens as new vaccines ordered

http://www.reuters.com/article/heal...22?pageNumber=2&virtualBrandChannel=0&sp=true

By Maggie Fox, Health and Science Editor

WASHINGTON (Reuters) - Influenza is widespread in 49 states, and this year's epidemic has killed at least 22 children, the U.S. Centers for Disease Control and Prevention reported on Friday.

On Thursday the U.S. Food and Drug Administration agreed to completely change next year's flu vaccine mix because all three strains included in the flu shot cocktail have mutated. But companies have a head start on working with two of the three, the CDC's Dr. Nancy Cox said.

FDA advisers agreed with the World Health Organization recommendations made last week on changing the vaccine to match the drifting flu viruses.

"In brief, seasonal influenza activity has increased during the past week," Cox told reporters in a telephone briefing.

Flu has killed 22 children so far this season, Cox said. She did not have details on any of the cases.

Cox said the CDC was watching the epidemic and asking state health departments to collect data on who gets sick, whether the were vaccinated, and whether influenza drugs were effective in fighting the infections.

Several European countries have reported that people are becoming infected with strains that resist the effects of Tamiflu, the antiviral drug made by Roche AG and Gilead Sciences.

Cox said the CDC had seen little evidence that flu was resisting Tamiflu in the United States. "We have actually seen antiviral resistance only sporadically in eight states," she said.

And there are reports that some people who have become ill with confirmed flu did get vaccinated.

The flu was also found in Florida, but the CDC said it had not become widespread.

FRESH COCKTAILS

Flu vaccines contain a mixture of two influenza "A" strains, which currently are types known by the shorthand of H3N2 and H1N1, and a "B" strain. These mutate or "drift" a little each year, which is why the vaccine must be formulated freshly each season.

This happens in the late winter or early spring in each hemisphere -- February in the Northern Hemisphere and September in the Southern.

"We would say based on our laboratory data that the match is not optimal both for the H3N2 component of the vaccine and also for the influenza B component," Cox told reporters in a telephone briefing.

"In Europe they have primarily had influenza A H1N1. Data generated in Europe indicate that strains circulating there are not so well-matched with the vaccine."

The vaccines still help prevent serious disease, Cox said, even if they do not completely prevent infection.

Last year officials were already ready to change the H3N2 vaccine and labs have been working to make a type that could be easily made into vaccine, so they have a head start, Cox said.

It takes months to make a batch of vaccine. Samples of virus must be injected into carefully cultivated fertilized eggs and then grown. Some strains grow well in eggs and others do not, so it is months before companies know how much vaccine they will have to sell for the upcoming season.

Five companies make flu vaccine for the U.S. market -- Sanofi Pasteur, Australia's CSL Ltd, GlaxoSmithKline Plc, Novartis AG and nasal spray maker MedImmune, recently acquired by AstraZeneca Plc.

Next week the CDC's Advisory Committee on Vaccine Practices will meet and discuss whether to expand recommendations for who gets influenza vaccine. Currently the vaccine is advised for all children between 6 months and 5 years old, people over 50, those with chronic illnesses and pregnant women.
 

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Suspect H5N1 Fatality in Guangdong China

http://www.recombinomics.com/News/02250801/H5N1_Guangdong.html

Recombinomics Commentary 07:34
February 25, 2008

A 44-year-old woman in south China's Guangdong Province was suspected to have bird flu, the provincial health department confirmed Monday.

The migrant female worker, surnamed Zhang, was found to have had contact with poultry died of illness and have had developed symptoms of fever and cough since February 16, the department said.

The patient was hospitalized last Friday in Haifeng County in Shanwei City.

The above comments describe a suspect H5N1 fatality in Shanwei City in Guangdong Province (see satellite map). This case follows the confirmed (41M) case in Guangxi earlier this month, and the confirmed (22M) case in Hunan. These three cases in the south follow a human to human cluster in northern China at the end of last year.

The cases in southern China are likely to be linked to clade 2.3 (Fujian strain), which is also the likely cause of the recent confirmed cases in northern Vietnam. All of the confirmed cases in southern China and northern Vietnam have been fatal. Suspect cases, as well as a 7 year old who has been described as confirmed in some media reports, have not been recently updated, but represent an addition concern with regard to milder, unreported cases.

Sequence data on the recent cases in China and Vietnam would be useful.
 

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Bangladesh's poultry industry losses over $580 mln due to bird flu

http://mathaba.net/news/?x=583158

DHAKA, Feb. 24 (Xinhua) -- Bangladesh's poultry industry has counted a loss of more than 41 billion taka (about 586 million U.S. dollars) in the last one year due to the outbreak of avian influenza or bird flu, leading newspaper The Daily Star reported Sunday.

Bangladesh Poultry Industries Coordination Committee submitted a study to the government last week, the newspaper said, adding that the study covered the period between February 2007 and January 2008.

"This loss has hit the rural economy which had earlier faced the devastation of cyclone Sidr and twin floods," Dr Jahangir Alam, director general of Bangladesh Livestock Research Institute (BLRI),told a roundtable on Bird Flu & Solution here on Saturday.

Alam asked for government help to ensure bank loans at 2-3 percent interest for the agriculture and poultry farmers to save the sector.

The roundtable was organized jointly by Watchdog Bangladesh and Breeders Association of Bangladesh.

Bird flu, which broke out in March last year, became devastating early this year forcing thousands of farms closed and tens of thousands jobless. So far, 44 out of the country's 64 districts have been affected by the disease.
 

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US involved in bird flu conspiracy: Indonesia

http://www.abc.net.au/am/content/2008/s2167325.htm

AM - Wednesday, 20 February , 2008 08:24:00
Reporter: Geoff Thompson
PETER CAVE: Indonesia’s Health Minister has suggested that the United States may be involved in a conspiracy to use the bird flu virus to develop biological weapons.

The extraordinary allegation is included in a new book, endorsed by President Susilo Bambang Yudhoyono, which describes Indonesia’s fight to assert its ownership of its virulent strains of avian influenza.

Concerns over that issue prompted Indonesia last year to stop sharing virus samples with the World Health Organization as Jakarta correspondent Geoff Thompson reports.

GEOFF THOMPSON: No country in the world has been hit by bird flu like Indonesia. Already this year 11 people have died and ten of those were from Jakarta or surrounding areas.

Indonesia’s uniquely virulent strain of H5N1 gave the country "bargaining power" according to Indonesia’s Health Minister Dr Siti Fadilah Supari, in her new book called "It’s Time for the World to Change" and strangely subtitled "The Divine Hand Behind Avian Influenza".

It’s this bargaining power which led Dr Supari in late 2006 to stop sharing Indonesia’s strains of bird flu with World Health Organization laboratories because of fears that any vaccines developed would then be sold for profit to developing countries with no benefit to Indonesia.

In essence, Indonesia sought to retain the "virus rights" and any profits to be made from its bird flu problem.

Back then on AM, Dr Supari effectively accused Australia of stealing Indonesia’s strain of H5N1 to make bird flu vaccines.

SITI FADILAH SUPARI: I never, I never give permission to send sample to the, send a specimen of the virus to Australia.

GEOFF THOMPSON: Now in her book Dr Supari has revealed, the full scope of the conspiracy she believes she is up against. "Developed countries become richer", she writes, "because they have the capability to develop the vaccine and control the world".

Dr Supari expresses alarm at WHO laboratories sharing bird flu virus data with the United States national laboratory in Los Alamos, New Mexico, where nuclear weapons are developed.

"Whether they use is it to make vaccine or develop chemical weapons, would depend on the need and interest of the US Government. It is indeed a very dangerous situation for the destiny of humanity", she writes and goes on to say ".. it is a matter of choice whether to use the material for vaccines or biological weapon development".

Despite the clear implication contained in her book, last night Dr Supari told the ABC, she didn’t intend to accuse the United States of being interested in turning H5N1 into a biological weapon.

SITI FADILAH SUPARI: I didn’t know whether our virus will be develop into a vaccine or will be develop into a biological weapon. So just a question - I didn’t blame United States, I didn’t blame any country.

PETER CAVE: Indonesia’s Health Minister, Dr Siti Fadilah Supari, speaking there to Indonesia correspondent Geoff Thompson.
 

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Woman dies of bird flu in southern China

http://today.reuters.co.uk/news/art...G349523_RTRIDST_0_HEALTH-BIRDFLU-CHINA-DC.XML

HONG KONG (Reuters) - A woman in the southern Chinese province of Guangdong has died of the H5N1 strain of bird flu, the government said on Monday, the fourth human death from the virus in China since late last year.

The 44-year-old migrant worker, surnamed Zhang, was working in Haifeng county in the eastern part of Guangdong, where she had contact with dead poultry. She died after developing fever and a cough.

"The patient's condition was too serious and she died on Monday after treatment failed," said a statement on the Web site of Guangdong's health department (www.gdwst.gov.cn).

The woman tested positive for H5N1 in a test conducted by Guangdong's Centre for Disease Prevention and Control, which has asked the Health Ministry to confirm the result.

The latest case follows two confirmed deaths from bird flu in China this year, one in central Hunan province and the other in the southern region of Guangxi. In December, a man in the eastern province of Jiangsu also died from the disease.

The spate of cases is a concern for a country that has the world's biggest poultry population, many of them backyard birds roaming free. China has struggled to combat the virus with mass inoculations for birds and an education campaign for those who handle them.

Zhang developed symptoms of fever, cough and pneumonia on February 16, but was only admitted to the county hospital on February 22, after first seeking treatment at a local clinic, the Guangdong statement said.

There was no sign of further cases of the virus that scientists fear could mutate into a form that can pass easily between people, sparking a global pandemic

All those who have had close contact with the patient have shown no similar symptoms so far," the statement said.

Of the 29 cases confirmed to date in China, 19 have been fatal.

According to WHO data, there have been 232 human deaths globally from the H5N1 strain and 366 confirmed cases of infection since 2003.
 

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H5N1 Fatality in Phu Tho Vietnam

http://www.recombinomics.com/News/02250804/H5N1_Phu_Tho.html

Recombinomics Commentary 18:16
February 25, 2008

Day 25/2, Health Ministry asserted add a death case because of virus flu A / H5N1. There is circumstances patient V.T.H, 23 year-old, in Cam Khe, Phú Tho.

TS Nguyen Huy Nga, director medicine bureau prevention and environment (Health Ministry) day 25/2 say, patient V.T.H, 23 year-old, in Cam Khe, Phú Tho. disease stand up day 14/2, in hospital in place day 19/2 and move up courtyard diseases infection and country tropic day 21/2. Here, patient get take model, male test with H5N1 and die in morning 25/2.

The above translation describes another fatal H5N1 case in northern Vietnam (see satellite map). This is the fourth fatality this year and follows the confirmed fatality in Guangdong Province in southern China. It is unclear if the patient above was among the hospitalized suspect patients mentioned earlier, but the jump in fatal cases in northern Vietnam and southern China raise concerns that the H5N1 in circulation is infecting patients more efficiently.

It is likely that the recent infections in patients, poultry, and wild birds in the area are clade 2.2.3, but sequence data on isolates from these recent outbreaks would be useful.
 

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Hong Kong Issues H5N1 Alert

http://www.recombinomics.com/News/02250802/H5N1_HK_Alert.html

Recombinomics Commentary 13:13
February 25, 2008

Public hospitals should report to the e-Flu system of HA all patients fulfilling the case definition of having pneumonia (all types) of unidentified etiology and travel history to affected areas/countries with confirmed human cases of avian influenza infection in the past six months, within seven days before symptoms onset.

The above comments are from an alert issued by Hong Kong in response to the recent H5N1 fatalities in southern China. The most recent (44F), who died today, has been H5N1 confirmed. Media reports suggest dead chickens owned and eaten by the victim are likely sources of the infection.

However, the new cases in southern China and northern Vietnam (see satellite map) raise the possibility of a more efficient transmission to humans and the above alert would target the more severe cases, which involve pneumonia, which is common in fatal cases. All of the recent confirmed cases in southern China and northern Vietnam have been fatal.

Sequence data on H5N1 from the recent cases would be useful.
 

JPD

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Bird flu spreading in South and East Asia

http://www.asianews.it/index.php?l=en&art=11619&size=A

More deaths are reported in China and Vietnam; many cases of infection in poultry are recorded in Pakistan and Bangladesh. The virus is spreading in poor areas where poultry is essential to the domestic economy.

Beijing (AsiaNews/Agencies) – The bird flu has killed more people in China and Vietnam as the virus rapidly spreads across South and East Asia.

In China tests show that Zhang Zhongqin, a migrant worker who died in Haifeng County (Guangdong), was infected with the deadly virus. She raised chicken and fell ill on 16 February after eating meat from a chicken that had died. She is the third official death recorded this year in the mainland.

Despite the death it is still business as usual in local poultry markets and the authorities have not taken any special measures.

They did however confirm another outbreak in poultry in Guizhou, which comes in the wake of a deadly outbreak ten days ago in Zhengan County, where more than 238,000 fowl were culled.

Since December China has reported four outbreaks of the disease in fowl.

In Vietnam a young teacher died yesterday in Phu Tho province.

“We still report bird flu outbreaks among poultry,” said Nguyen Huy Nga, director of the Preventive Medicine Department in Vietnam’s Ministry of Health. “The risk of bird flu infection among people remains very high and we expect more human cases,” he added.

In Pakistan the government reported a new outbreak in fowl in Karachi, the fourth case in a month.

Pakistan also confirmed its first human death from the virus near the north-western town of Abbottabad in December.

In Bangladesh mass culling has not stopped the spread of the virus. The latest area to be hit is the district of Munshiganj.

At present the avian flu affects 44 of the country’s 64 districts.

The poultry sector, which generates more than US$ 1.8 billion annually, has suffered so far US$ 650 million in losses.

In all these countries poultry is an essential component in the domestic economy. But governments have a hard time containing outbreaks, partly because people are not easily persuaded to work with the authorities.
 

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Egypt reports another H5N1 case

http://www.news24.com/News24/Africa/News/0,,2-11-1447_2277640,00.html

Cairo - A four-year-old girl from southern Egypt has been diagnosed as having contracted the deadly H5N1 bird flu virus, the health ministry has announced.

The girl was admitted to hospital on Monday with a high temperature in Menya before being transferred to Cairo for further treatment, the official MENA news agency quoted ministry spokesperson Abdul-Rahman Shahin as saying.

She became the 44th case of the virus reported in Egypt since the first outbreak was announced in February 2006.

A total of 19 people had died from the virulent strain. Four people died at the start of 2008, although no fatalities had been reported for the past six months.

Women and children had borne the brunt of the virus due to their role in taking care of domestic fowl in Egypt.
 

JPD

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Vietnamese woman dies of bird flu

http://www.nerve.in/news:253500131270

Hanoi, Feb 26 (Xinhua) The Vietnamese health ministry has confirmed that the country's latest human victim of bird flu was a 23-year-old woman from northern Phu Tho province who died here Monday, a local newspaper reported Tuesday.

The woman started to exhibit bird flu symptoms Feb 14 and was admitted to a provincial hospital Feb 19. She was then transferred to the Tropical Diseases Hospital Feb 21 and tested positive for the bird flu virus strain H5N1, Nguyen Huy Nga, a senior health ministry official, said.

The woman did not have direct contact with sick fowls before showing bird flu symptoms.

Vietnam has confirmed 105 human cases of bird flu infection, including 51 fatalities, since the disease hit the country in December 2003.
 

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Pakistan reports fourth February bird flu outbreak

http://www.alertnet.org/thenews/newsdesk/ISL139793.htm

26 Feb 2008 04:55:40 GMT
Source: Reuters
ISLAMABAD, Feb 26 (Reuters) - Pakistani authorities have found a fresh outbreak of the H5N1 bird flu in chickens, the fourth case in a month in the South Asian country, a government official said on Tuesday.

The new outbreak was confirmed on Monday at a poultry farm in Karachi, the country's biggest city and where authorities reported two cases early this month, the official said.

The last bird flu case was reported in a northwestern town on Feb. 16.

"Laboratory tests have confirmed the H5N1 virus on a farm that is located away from populated areas," said health ministry spokesman Orya Maqbool Jan Abbasi.

Before sending samples to Islamabad, the farm owner had culled chickens and dumped them in a well which, Abbasi said, was in violation of the rules.

"This was wrong," Abbasi said. "Now, we have sprayed the well and closed it."

There were about 10,000 birds on the farm, he added.

Several outbreaks of the H5N1 strain of avian influenza in poultry and other birds have occurred in Pakistan, most in the country's northwest, since it was first detected in early 2006.

Pakistan confirmed its first human death from the virus near the northwestern town of Abbottabad in December.

Poultry officials say sporadic outbreaks have badly hit the industry, which is estimated to be worth 200 billion rupees (around $3.2 billion) and employs about 1.5 million people.

There is no general alarm, however, and most Pakistanis continue to eat chicken.
 

JPD

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Suspect H5N1 Fatality in Sohag Egypt

http://www.recombinomics.com/News/02260802/H5N1_Sohag_Fatality.html

Recombinomics Commentary 07:51
February 26, 2008

And the deputy confirmed that one of the conditions [suspected cases] were dead yesterday Friday [Feb 22] and calls Amaal Salah Qubaisy Al Sayed (34 years) is married and have a new child four months.

And Youssef added a saying "the doctor carried out immediately the direction by the patient himself to the central hospital of Tahta for a work that he radiated [X-ray] and analyses of a suspicion of the bird flu, and the doctor was not content with that, but for the reassurance more carried out its transfer of the doubt [of the suspected case] carried out its transfer to Tahta fevers that in front of it, and it was confirmed that it is the bird flu to a blood money from the common diagnosis from the doctors".

the doctor was not content with that, but went himself to Suhaj fevers with accompanying the patient by Tahta ambulance for their acceptance at in the morning, explaining that it has worked a report its referral to the Minister of Health and the concerned authorities took place until the horrible news came with the death of Mrs. on Friday 22/2/2008 at after the afternoon four and she translated from Suhaj fevers to the general hospital of Suhaj

And the deputy denounced the neglect that happened in the non taking of the sample the hospital of the fevers Suhaj from the patient and she at it at 2 in the morning at 4 after the afternoon!!

The above translation describes a fatal suspect H5N1 case in Sohag. The patient did not improve last week and after x-rays raised additional concerns of an H5N1 infection, she was transferred to from Tahta to Sohag, but died shortly after transfer and a sample for testing was not collected.

This case is in addition to the H5N1 confirmed case (4F) in Minyah. That case also had x-ray confirmed pneumonia and is hospitalized in Cairo.

The confirmed and suspect cases may be signaling a new wave of H5N1 infections in Egypt. Last year there was a spike in cases in March and April, but those cases were mild. Only one in 17 H5N1 confirmed cases died, in marked contrast to cases at the beginning of last season or this season when 11 of 12 confirmed patients died.

Recently release poultry sequences include Gharbiya-like sequences with receptor binding domain changes, V223I and M230I, as well as reversion to the original poly-basic cleavage site RERRRKKR.

Release of human HA and NA sequences, as well as poultry NA sequences from this season would be useful. In late 2007 four of the five confirmed patients died, yet no sequence data has been made public by NAMRU-3 or the CDC.
 

JPD

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H5N1 Cleavage Site Reversion in Gharbiya Sequences in Egypt

http://www.recombinomics.com/News/02260801/H5N1_Gharbiya_Reversion.html

Recombinomics Commentary 00:55
February 26, 2008

Poultry H5N1 HA sequences from Egypt have been recently released by NAMRU-3. Included in the released sequences was a series that contained the two receptor binding domain changes present in the Gharbiya cluster, V223I and M230I. However, this series has a number of additional polymorphisms that had been previously limited to east Asia. Moreover, many of these changes are non synonymous, raising concerns that the rapid evolution is being driven by mismatched vaccines. Although the vaccination campaign has been extensive, reports of H5N1 in poultry have been high.

One of the non synonymous changes converts the signature Qinghai polybasic cleavage site of GERRRKKR into the original cleavage site of RERRRKKR, which was first reported in a Guangdong goose in 1996, and subsequently became widespread in eastern Asia in highly pathogenic H5N1. Although various human clade 2 isolates have signature changes such as RESRRKKR for clade 2.1 in Indonesia and RERRRKR for clade 2.3 (Fujian strain) in China and now moving into southeast Asia, the conversion of the Qingai cleavage site to the original motif has not been reported in public sequences.

However, the largest cluster in Indonesia, the Karo cluster in 2006, has the original cleavage site, which is now on Gharbiya-like sequences in Egypt. It is not clear if the Tamiflu resistance marker, N294S, is on the avian or human sequences this season, because no NA sequences have been released.

The acquisition of the original consensus cleavage is indicative of multiple changes in the recently released HA sequences. The recent confirmation of in a child in Minya who has a least one lung infection, in contrast to the mild cases last season, is cause for concern.

Sequences with traditional RERRRKKR cleavage site

A/chicken/Egypt/9390NAMRU3-CLEVB157/2007
A/chicken/Egypt/9392NAMRU3-CLEVB167/2007
A/chicken/Egypt/9391NAMRU3-CLEVB158/2007
A/chicken/Egypt/9387NAMRU3-CLEVB148/2007
A/chicken/Egypt/9385NAMRU3-CLEVB125/2007
A/chicken/Egypt/9386NAMRU3-CLEVB/136/2007
A/chicken/Egypt/3051NAMRU3-CLEVB78/2007
 

JPD

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China reports new bird flu outbreak

http://www.vnanet.vn/Home/EN/tabid/119/itemid/237607/Default.aspx

Beijing (VNA) – China has reported an outbreak of bird flu in poultry in the country’s southwestern mountainous province of Guizhou , the Ministry of Agriculture said.

The National Bird Flu Reference Laboratory confirmed the case, which occurred in Zheng'an county, Zunyi city on February 17, was caused by the highly pathogenic H5N1 virus, the ministry said.

The disease, which killed nearly 4,000 birds, was brought under effective control after the culling of about 240,000 poultry in the region.

It is China 's fourth bird flu outbreak in poultry this year, with two in southwestern Tibet Autonomous Region and one in northwestern Xinjiang Uygur Autonomous Region.

The same day, a 44-year-old woman who was suspected of having bird flu died in hospital in the southern province of Guangdong , the provincial health department confirmed.

China has recorded a total of 29 human bird flu cases, of which 19 were fatal, according to the World Health Organisation (WHO).-Enditem
 

JPD

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Spread of bird flu strains slowed at some borders

http://www.eurekalert.org/pub_releases/2008-02/uoc--sob022008.php

Study results detail H5N1 migration, provide means to measure intervention success

Irvine, Calif. — Several strains of the bird flu virus that raged across southern China were blocked from entering Thailand and Vietnam, UC Irvine researchers have discovered.

This first-ever statistical analysis of influenza A H5N1’s genetic diversity helps scientists better understand how the virus migrates and could, in the future, help health officials determine whether efforts to thwart its spread were successful.

“Some countries appear more exposed to bird flu invasion than others. Learning that is a good step in discovering which social and ecological factors promote, or, on the other hand, hamper the virus’ spread,” said Robert G. Wallace, a postdoctoral researcher and lead author of the study.

The results appear online Feb. 27 in the journal PLoS ONE.

Since its emergence in 1996, H5N1 has only sporadically been passed from birds to humans. Although only about 350 human cases of this influenza have been recorded worldwide, its high mortality rate raises concerns that if the virus mutates in such a way that humans can pass it on, a deadly flu pandemic may result. More than 60 percent of humans who contract the virus die from it.

In this study, Wallace and Walter M. Fitch, professor of ecology and evolutionary biology at UCI, analyzed nearly 500 publicly available genetic sequences of proteins found on the surface of the influenza virus. These sequences originally were collected from 28 Eurasian and African localities through 2006.

The study also showed that H5N1 strains circulating in Indonesia, Japan, Thailand and Vietnam shared the most evolutionary history with H5N1 circulating in several provinces in southern China. The provinces, Guangdong, Fujian and Hong Kong, are engaged in intensive international trade, including poultry. Previous research has concluded the poultry trade is a key mechanism for the spread of the H5N1 virus.

The researchers suggest that health officials trying to block new strains of the virus from spreading could use the methods employed in this study to determine whether interventions are working.

“You can think of it as a type of evolutionary forensics,” Wallace said. “When a bomb explodes, investigators can determine how many charges went off and the strength and direction of the blast, all from the resulting damage alone. Here we can determine the way H5N1 has spread and evolved by the resulting viral diversity.”

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The National Institutes of Health funded the study.
 

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WHO rules out human transmission in bird flu deaths

http://news.yahoo.com/s/nm/20080227/hl_nm/birdflu_china_dc

BEIJING (Reuters) - All three Chinese who died of the H5N1 strain of bird flu this year had contact with sick poultry, the World Health Organisation said on Wednesday, adding there was no evidence of transmission between humans.

A 44-year-old woman in the southern Chinese province of Guangdong on Monday became the third human death from the virus this year in China, following cases in Hunan and Guangxi.

"The three recent cases were not unexpected considering the winter season and the fact that we know the virus is still circulating in the environment," the WHO's China director, Hans Troedsson, said in a statement. Bird flu tends to be more active in the cold.

"We have no indications of any larger number of undetected cases," he said.

With the world's largest poultry population, China is at the centre of the fight against bird flu, which scientists fear could mutate into a form that can pass easily between people, sparking a pandemic.

China has reported four outbreaks of the disease in poultry since December -- the latest announced on Tuesday -- as temperatures across the country have hit their lowest in decades.

The WHO said the human cases were isolated and that all had a history of contact with sick or dead poultry before falling ill.

"At this stage of the investigation there is no evidence of human-to-human transmission. All close contacts are under medical observation and are showing no clinical symptoms so far," Troedsson said.
 

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Bird flu outbreaks reported in eight provinces

http://www.nhandan.com.vn/english/life/270208/life_b.htm

Nhan Dan - Bird flu outbreaks have occurred in eight provinces, announced the Veterinary Department in Hanoi on February 26.

The eight provinces include Thai Nguyen, Quang Ninh, Hai Duong , Nam Dinh, Tuyen Quang, Ninh Binh, Long An and Vinh Long.

Vinh Long was the latest province that has had a bird flu outbreak, said the Veterinary Department under the Ministry of Agriculture and Rural Development at a meeting of the National Steering Committee on Bird Flu Control.

Cao Duc Phat, minister of agriculture and rural development, stressed the fast spread of the epidemic on poultry and humans.

He asked responsible agencies to boost the education of people about the epidemic so as to increase public awareness. In addition, supervision or the development epidemic developments should be promoted and a focus should be given to immunization inlocal poultry flocks.

The Veterinary Department should facilitate epidemiology operations so as to provide early warnings against possible epidemic outbreaks for effective control, asked the minister.

He also proposed the Ministry of Finance to consider additional funds to help ease farmers’ financial difficulties in culling their poultry flocks and local efforts in epidemic control according market prices.
 

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Two Vietnamese suspectedly infected with bird flu

http://news.xinhuanet.com/english/2008-02/27/content_7677650.htm

HANOI, Feb. 27 (Xinhua) -- Vietnam's National Institute of Infectious and Tropical Diseases is treating two people from northern Hung Yen and Thai Nguyen provinces, who have developed bird flu symptoms, according to local newspaper Pioneer on Wednesday.

Specimens from a 23-year-old person from Hung Yen and a 48-year-old person from Thai Nguyen, who currently need respiratory assistance because their lungs have been severely damaged, are being tested for bird flu virus strain H5N1, the newspaper quoted Nguyen Hong Ha, vice director of the institute in Hanoi, as saying.

Initial investigation has shown that the two patients had contacted with fowls before exhibiting bird flu symptoms.

To date, Vietnam has confirmed a total of 105 human cases of bird flu infections, including 51 fatalities, in 35 cities and provinces since bird flu started to hit the country in December 2003.

Vietnam currently has eight localities having poultry being hit by bird flu: Thai Nguyen, Quang Ninh, Hai Duong, Nam Dinh, Tuyen Quang and Ninh Binh in the northern region, and Long An and Vinh Long in the southern region, the country's Department of Animal Health said Feb. 26.
 

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Two more suspected type A/H5N1 flu patients reported

http://english.vietnamnet.vn/social/2008/02/770855/

VietNamNet Bridge – There are two people who are suspected to get type A/H5N1 flu, reported the National Steering Committee or Bird Flu Control’s meeting on February 26.

The Veterinary Agency also reported that bird flu has appeared in eight provinces in Vietnam, including: Thai Nguyen, Quang Ninh, Hai Duong, Nam Dinh, Ninh Binh and Tuyen Quang in the north and Long An and Vinh Long and the south.

Hoang Van Nam, Vice Head of the agency, said compared to the same period of 2007, bird flu epidemic is not stronger but it has killed five people while the total deaths for the whole 2007 was only four.

He also warned that bird flu trends to quickly infect human and without urgent measures to curb, many more people will get type A/H5N1 virus. The Red River Delta and the Mekong Delta are two highly prone regions for the boom of bird flu on poultry.

Dr. To Long Thanh, Deputy Director of the Centre Veterinary Diagnosis Centre, said the increasing number of type A/H5N1 patients in 2007 proves that the volume of virus on poultry is huge and it is very dangerous for the people who have direct contact with fowls.

Thanh said that recently Thai scientists announced a discovery that H5N1 virus existed in blood of mosquitoes in a poultry farm in southern Thailand. Scientists are researching weather H5N1 virus can go from mosquitoes to humans or not.

The latest report by the Central Epidemiology Institute reveals that two patients from Hung Yen and Phu Tho provinces are suspected to get H5N1 and they are under treatment at a hospital in Hanoi.

Minister of Agriculture and Rural Development Cao Duc Phat said bird flu epidemic is now very serious. The epidemic is quickly spreading in both fowls and humans.

He noted that compensation for farmers whose poultries are culled is at the same to the level of 3-4 years ago (VND15,000/head on average) while the market price for poultry is 3-4 folds higher.

The Minister proposed to increase the compensation to 70% of the market price of poultry and up to 100% for households that voluntarily declare and cull ill fowls.

He also asked related agencies and local authorities to strengthen supervision of bird flu.
 

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Pandemic history offers lessons

http://bodyandhealth.canada.com/cha...ext_id=3113&channel_id=1020&relation_id=10882

The ongoing concern that a pandemic is primed to strike the world is warranted in many respects, but some experts wonder if the current situation smacks of the "plague that wasn't" of 1976.

Back then, concerns over a swine flu pandemic - which turned out to be false - led to a nationwide vaccination program that was mired in complications, including 30 deaths.
How does that compare to today?

In 1976, a small influenza outbreak occurred in Fort Dix, NJ, which led to one death and a number of people falling ill.

Scientists analyzed the influenza strain and found that it affected pigs. That was significant because it showed researchers that the situation they were dealing with was entirely different than the common "flu," which affects humans.

To protect against it, a new vaccine would need to be developed.

The avian (bird) flu in Asia is also not the common form of influenza that affects humans.

Adding to the alarm bells in 1976 was that there were biological similarities between the Fort Dix influenza and a 1918 pandemic that killed millions. As well, according to projections, the timing was right for another "expected" pandemic.

Presently, experts are also saying that the world is due for another influenza outbreak and the avian flu does show some mutations related to the mutations of the 1918 strain.

Reacting to ever-mounting public concerns, US President Gerald Ford ordered the establishment of the National Influenza Immunization Program, and millions of Americans were inoculated.

Reportedly, the vaccine led to 500 people suffering from a paralyzing nerve disease. It also was believed to be the cause of 30 deaths. Two months after starting the program, the vaccinations were stopped.

In the end, the 1976 influenza was not a pandemic - it did not spread outside of Fort Dix and was not the virulent killer everyone feared it would become.

While the actions and reactions of 1976 had some devastating consequences, the mistakes of the past have taught us valuable lessons.

For instance, today, wide-scale vaccinations wouldn't likely be given until it is certain that a real pandemic exists. As well, any vaccination program would be closely monitored.

The Canadian government has also developed a comprehensive pandemic plan, available on the Health Canada website at www.hc-sc.gc.ca. The plan includes prevention activities, surveillance, vaccine programs, and response and implementation activities for controlling the pandemic. It also outlines the different phases of a pandemic and the roles and responsibilities for each level of government at each phase.

Even though hindsight is 20/20 and the swine flu case is now dubbed the "plague that wasn't," experts still emphasize that influenza is a real threat to public health and precautions should be taken.
 

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Avian influenza - situation in Egypt - update 4

http://www.who.int/csr/don/2008_02_28/en/index.html

28 February 2008

The Ministry of Health and Population of Egypt has announced a new human case of avian influenza A(H5N1) virus infection. The case is a 4 years old female from El-Edwa district, Menia governorate. She developed symptoms on 21 February and was hospitalized on 24 February. She is receiving treatment and is in a stable condition.

Investigations into the source of her infection indicate exposure to sick poultry in the week prior to onset of symptoms.

Of the 44 cases confirmed to date in Egypt, 19 have been fatal.
 

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Five cases resistant to Tamiflu seen aided by Relenza

http://search.japantimes.co.jp/cgi-bin/nn20080229a7.html

A strain of the influenza virus resistant to the antiviral drug Tamiflu was found in five flu patients in Yokohama, with three of them believed to comprise a group infection, health officials of the city said Thursday.

Relenza, another antiviral drug, was effective for the patients, who were all infected with the type A Soviet Union flu. Yokohama City Institute of Health advised caution in selecting a drug for that type of influenza.

The five, residents aged 8 to 13 of the same ward in Yokohama, saw doctors on Jan. 28. Three attend the same elementary school; the other two were diagnosed at the same health-care institution.

All were found to have a virus resistant to Tamiflu in a test before they were prescribed treatment.

Given that the resistant strain has not been found since then, they were isolated cases of infection, the institute said.

A similar Tamiflu-resistant type A Soviet Union strain was also found this winter in Europe and North America.

Tamiflu is known to be effective at containing flu symptoms, if taken early. Japan is building a stockpile of the drug to prepare for a new type of influenza epidemic. It has enough Tamiflu for 28 million people and enough Relenza for 1.35 million.
 

JPD

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New bird flu cases found in Dominican Republic

http://news.xinhuanet.com/english/2008-03/01/content_7696089.htm

HAVANA, Feb. 29 (Xinhua) -- New cases of bird flu have been reported in the northeastern region of the Dominican Republic and thousands of birds were culled to prevent the spread of the virus, the country's Agriculture Ministry said on Friday.

Precautionary measures have been taken, including the culling of chickens within a radius of five kilometers of the virus-hit area, since the cases were found earlier this week, news reports said.

This is the bird flu outburst in the country since December 2007.

The virus has dealt a heavy blow to chicken farms in the country since neighboring Haiti stopped imports of chicken and eggs from the Dominican Republic since the virus was found on chickens there.
 

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H5N1 Confirmed in Canada Goose in Dorset England

http://www.recombinomics.com/News/02290801/H5N1_Goose_Dorset.html

Recombinomics Commentary 15:25
February 29, 2008

Defra has today confirmed that a Canada goose collected on 25 February in the Wild Bird Monitoring Area in Dorset as part of wild bird surveillance has tested positive for highly pathogenic H5N1 Avian Influenza. The bird was found less than a kilometre from where the previous positive cases in swans were collected.

This is the 11th wild bird with highly pathogenic H5N1 in the area. The previous ten cases were in wild mute swans, with the last case being confirmed on 4 February.

The above comments on an H5N1 confirmed Canada goose in Dorset are not a surprise. However, the finding of H5N1 over a two month period in two wild bird species further supports H5N1 circulation in wild birds in the region (see satellite map).

Moreover, the DEFRA description of the sequence relationships between the first four isolates leaves little doubt that the infections are not from a common source, as indicated or implied in the DEFRA report and press releases.

Recent sequences from other outbreaks in Europe involve exact matches between wild birds and infected poultry, demonstrating the level of fidelity in isolates collected in the same region over a short time period. Such levels have not been reported for the isolates in Dorset.

The latest positive demonstrates that enhanced surveillance detects H5N1 in wild bird populations in England. The described sequences are clade 2.2.3, which is the only subclade reported in western Europe since the summer of 2007. Sequences have been released for multiple independent infections in Germany in the summer of 2007, as well as more recent isolates from Krasnodar and Romania. Sequences from the same sub-clade have been published from Kuwait and Saudi Arabia.

In contrast, DEFRA has withheld the sequences from H5N1 in Suffolk in the fall of 2007, as well as the 11 confirmed cases in or near the swannery in DEFRA.

Release of the H5N1 sequences from isolates in England would be useful.
 

JPD

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Hundreds of chickens culled in Semarang due to bird flu

http://www.antara.co.id/en/arc/2008/3/1/hundreds-of-chickens-culled-in-semarang-due-to-bird-flu/

Ungaran (ANTARA News) - Hundreds of chickens in Krajan villa, Bringin subdistrict, Semarang District, Central Java, were culled due to bird flu (avian influenza) virus spreading in the area.

Around 400 chickens were burned and then buried in an attempt to curb bird flu virus, Siti Fatimah, a local resident of Krajan, said here on Thursday.

The measure was taken following the death of tens of Fatimah`s chickens earlier due to bird flu virus, she said.

Meanwhile, Head of the Semarang animal husbandry and fishery office Agus Purwoko Djati said that a rapid kit test conducted by officers of the Participatory Disease Surveillance Response team had confirmed that the chickens had died of bird flu.

To prevent the bird flu virus from spreading to wider areas, hundreds of chickens found surrounding the dead chickens were culled. Owners of the chickens received Rp10,000 in compensation for each chicken that has to be killed. (*)
 
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